Have questions? Visit https://www.reddit.com/r/SNPedia

HLA

From SNPedia


The HLA system is a number of antigens that make up the human class I and II Major Histocompatibility Complex (MHC), a regulator of the immune system important to organ compatibility and autoimmune diseases.

There are 6 major HLA antigen loci: Class I {A, B, C}, Class II {DP, DQ, DR}, determined by several genes with 1000s of variants. These combinations give rise to the HLA phenotypes and serotypes. An example result is phenotype: A*01:01/*03:01, C*07:01/*07:02, B*07:02/*08:01, DRB1*03:01/*15:01, DQA1*05:01/*01:02, DQB1*02:01/*06:02, with serotype: A1,A3,B7,B8,DR3,DR15(2),DQ2,DQ6(1). These can be classified into haplotypes, which relate to ancestry, such as 'super B8' in Western Europeans.

Variants are recorded in the IMGT-HLA database. Class I antigens have single genes, with minor variation in E, F, and G, while J, K and L are pseudogenes. Class II has α and β chains. DR has 4 β genes with ~400 combinations, while the α is functionally invariant. DM and DO affect antigen presentation. DP has been sequenced, but is less understood.

Allele frequencies in world populations[edit]

Total number of alleles per antigen locus[edit]

Locus Total Variants
HLA-A 2,884
HLA-B 3,589
HLA-C 2,375
HLA-DP 16,036
HLA-DQ 34,528
HLA-DR 11,431
HLA-DO 156
HLA-DM 91

Tag SNPs for HLA antitypes on the 1M Illumina chip[edit]

HLA SNP r2 HLA_FRQ SNP_FRQ
A*01:02 rs6902544 0.059 0.001 0.01
A*01:03 rs6911622 0.008 0.001 0.06
A*02 rs2394250 0.432 0.43
A*02:01 rs2975033 0.25
A*02:11 rs16897572 0.019 0.003 0.08
A*02:16 rs11754099 0.005 0.000 0.03
A*02:17 rs1233400 0.003 0.001 0.16
A*03:02 rs2523447 0.080 0.004 0.04
A*11:02 rs2286404 0.013 0.001 0.06
A*11:03 rs11754099 0.018 0.001 0.03
A*11:05 rs3025642 0.005 0.000 0.04
A*24:01 rs805284 0.007 0.000 0.03
A*24:03 rs3093665 0.009 0.002 0.02
A*24:07 rs2017525 0.044 0.005 0.10
A*24:10 rs3129727 0.007 0.000 0.02
A*26:08 rs2301751 0.007 0.000 0.05
A*30:04 rs2857449 0.068 0.001 0.01
A*31:01 rs1061235 0.085 0.08
A*31:03 rs6457694 0.008 0.000 0.02
A*31:12 rs3895681 0.014 0.000 0.01
A*34:01 rs6904120 0.079 0.010 0.06
A*34:02 rs16895214 0.061 0.003 0.02
A*36:01 rs2747419 0.040 0.001 0.02
A*36:03 rs4713310 0.004 0.000 0.05
A*66:01 rs9261316 0.064 0.004 0.05
A*66:02 rs6906662 0.006 0.000 0.03
A*68:03 rs4711248 0.046 0.001 0.01
A*69:01 rs2517922 0.012 0.001 0.05
A*80:01 rs2516312 0.015 0.001 0.01
B*07:04 rs3104402 0.009 0.000 0.02
B*15:02 rs2395148 0.025 0.003 0.03
B*15:03 rs7742033 0.054 0.005 0.02
B*15:04 rs9391714 0.009 0.000 0.03
B*15:05 rs6903896 0.004 0.000 0.03
B*15:06 rs9500864 0.008 0.000 0.02
B*15:07 rs17493811 0.016 0.001 0.04
B*15:08 rs9357117 0.027 0.001 0.02
B*15:09 rs16899178 0.007 0.000 0.05
B*15:10 rs3093542 0.043 0.002 0.02
B*15:13 rs9357117 0.041 0.001 0.02
B*15:15 rs2021783 0.018 0.000 0.01
B*15:16 rs3218822 0.014 0.001 0.02
B*15:18 rs16899178 0.033 0.003 0.05
B*15:21 rs6902544 0.069 0.001 0.01
B*15:24 rs3895681 0.015 0.000 0.01
B*15:25 rs2859110 0.017 0.001 0.01
B*15:26 rs3763288 0.021 0.002 0.09
B*15:27 rs3817964 0.003 0.000 0.06
B*15:30 rs9405015 0.009 0.000 0.02
B*18:02 rs12662077 0.010 0.001 0.05
B*27 rs13202464 0.071 0.07
B*27:03 rs9366775 0.007 0.000 0.03
B*27:04 rs3819299 0.023 0.001 0.06
B*27:07 rs3093671 0.021 0.001 0.03
B*35:02 rs2073724 0.058 0.010 0.08
B*35:05 rs2073724 0.032 0.003 0.08
B*35:12 rs3093561 0.086 0.001 0.01
B*35:14 rs2517623 0.018 0.000 0.01
B*35:17 rs3093561 0.029 0.001 0.01
B*35:21 rs7761890 0.009 0.000 0.02
B*35:43 rs9366775 0.012 0.000 0.03
B*38:02 rs2233954 0.049 0.004 0.05
B*39:01 rs6910087 0.060 0.010 0.16
B*39:02 rs7761890 0.006 0.000 0.02
B*39:08 rs4711250 0.015 0.000 0.01
B*39:09 rs2071288 0.011 0.001 0.01
B*39:10 rs9469093 0.008 0.001 0.02
B*40:05 rs16899178 0.006 0.000 0.05
B*40:09 rs3093561 0.014 0.000 0.01
B*40:10 rs35759989 0.005 0.000 0.03
B*40:23 rs2021783 0.018 0.000 0.01
B*42:02 rs9468942 0.047 0.001 0.01
B*44:04 rs3130666 0.016 0.000 0.02
B*45:01 rs2523477 0.087 0.010 0.08
B*48:01 rs3093668 0.052 0.003 0.02
B*50:02 rs915653 0.010 0.000 0.02
B*51 rs79556279 0.0573 0.05
B*51:02 rs3093561 0.038 0.001 0.01
B*51:05 rs3093665 0.021 0.000 0.02
B*51:06 rs6903896 0.017 0.001 0.03
B*51:08 rs7747738 0.017 0.001 0.03
B*54:01 rs3819284 0.077 0.002 0.02
B*56:03 rs2021783 0.018 0.000 0.01
B*56:04 rs3819284 0.019 0.000 0.02
B*57 rs2395029 0.057 0.05
B*57:02 rs9296020 0.033 0.03
B*57:03 rs9468559 0.007 0.001 0.02
B*58:02 rs6902738 0.053 0.002 0.01
B*73:01 rs2071288 0.060 0.001 0.01
B*78:01 rs7747738 0.017 0.001 0.03
B*81:01 rs9263582 0.014 0.001 0.05
C*02:06 rs3093671 0.006 0.000 0.03
C*03:05 rs3093561 0.003 0.000 0.01
C*03:06 rs2517490 0.007 0.000 0.02
C*04:03 rs2269713 0.039 0.003 0.04
C*04:04 rs2074475 0.006 0.000 0.02
C*04:07 rs7774197 0.003 0.000 0.05
C*04:10 rs3819284 0.010 0.000 0.02
C*06:02 rs10484554 0.11
C*07:26 rs9296020 0.009 0.000 0.01
C*08:01 rs2524083 0.071 0.010 0.12
C*12:04 rs28732150 0.015 0.001 0.05
C*15:04 rs16899178 0.031 0.002 0.05
C*16:04 rs7747738 0.059 0.002 0.03
C*18:01 rs7759127 0.015 0.002 0.12
DPA1*01:04 rs11751659 0.062 0.010 0.11
DPA1*01:05 rs9468942 0.010 0.001 0.01
DPA1*02:02 rs1431403 0.077 0.060 0.34
DPA1*03:01 rs9468559 0.030 0.010 0.02
DPA1*04:01 rs7763822 0.016 0.003 0.04
DPB1*15:01 rs11751659 0.083 0.010 0.11
DPB1*16:01 rs3129270 0.039 0.010 0.12
DPB1*18:01 rs448733 0.017 0.002 0.05
DPB1*19:01 rs3128935 0.029 0.003 0.06
DPB1*20:01 rs3129270 0.032 0.004 0.12
DPB1*21:01 rs2021783 0.013 0.001 0.01
DPB1*22:01 rs9368704 0.003 0.000 0.01
DPB1*26:01 rs6930052 0.040 0.004 0.05
DPB1*28:01 rs9469378 0.024 0.001 0.05
DPB1*30:01 rs2736182 0.004 0.000 0.05
DPB1*31:01 rs9368704 0.011 0.000 0.01
DPB1*33:01 rs2517490 0.007 0.000 0.02
DPB1*34:01 rs3130609 0.006 0.000 0.04
DPB1*35:01 rs6937061 0.008 0.000 0.04
DPB1*40:01 rs6930217 0.012 0.001 0.01
DPB1*45:01 rs6937061 0.008 0.000 0.04
DPB1*48:01 rs2021783 0.018 0.000 0.01
DPB1*81:01 rs9469063 0.006 0.000 0.03
DPB1*85:01 rs9468559 0.021 0.001 0.02
DQB1*03:04 rs17501267 0.072 0.003 0.04
DQB1*03:05 rs11759238 0.006 0.000 0.02
DQB1*04:01 rs9368704 0.033 0.003 0.01
DQB1*05:04 rs28732193 0.054 0.001 0.02
DRB1*03:01 rs2187668 0.077 0.08
DRB1*03:04 rs2517623 0.004 0.000 0.01
DRB1*04:03 rs3763305 0.061 0.010 0.06
DRB1*04:06 rs9391637 0.011 0.001 0.01
DRB1*04:07 rs4947332 0.047 0.010 0.02
DRB1*04:08 rs17501267 0.077 0.010 0.04
DRB1*04:09 rs9267658 0.003 0.000 0.06
DRB1*04:10 rs6902544 0.007 0.000 0.01
DRB1*04:11 rs3817964 0.010 0.001 0.06
DRB1*04:37 rs7742120 0.003 0.000 0.07
DRB1*08:02 rs9501626 0.039 0.004 0.09
DRB1*08:03 rs2395148 0.039 0.003 0.03
DRB1*08:04 rs7356880 0.066 0.003 0.03
DRB1*08:06 rs9469063 0.013 0.000 0.03
DRB1*11:02 rs28366191 0.016 0.003 0.05
DRB1*11:03 rs17208888 0.052 0.004 0.07
DRB1*11:04 rs17208888 0.059 0.010 0.07
DRB1*11:06 rs11754099 0.011 0.001 0.03
DRB1*11:08 rs9469024 0.017 0.000 0.01
DRB1*12:01 rs3129888 0.054 0.010 0.10
DRB1*13:04 rs3130666 0.012 0.000 0.02
DRB1*13:05 rs17208888 0.010 0.001 0.07
DRB1*14:02 rs7761890 0.017 0.002 0.02
DRB1*14:05 rs3129727 0.011 0.000 0.02
DRB1*14:06 rs12055568 0.017 0.001 0.03
DRB1*14:07 rs11575840 0.012 0.000 0.02
DRB1*14:15 rs3129727 0.016 0.000 0.02
DRB1*15:01 rs9271366 0.15
DRB1*16:02 rs9270986 0.034 0.003 0.09

Variants associated with frequent haplotypes in Europeans[edit]

Source: [PMID 24988075]

Frequent HLA Haplotype Variant frequently associated (r2>0.6)
A*0101~B*0801~DRB1*0301 rs3135293 rs3132378 rs2230683 rs13206458 rs3135318 rs3118361 rs3130892 rs3130895 rs3131068 rs3131069 rs3131071 rs3130844 rs3131072 rs3130845 rs3130847 rs3131076 rs148696809 rs3130885 rs3130837 rs3129791 rs3130890 rs3131079 rs3129794 rs3130891 rs3130893 rs3130894 rs3131081 rs3130896 rs3135317 rs3129797 rs3129798 rs3129799 rs3117146 rs3129800 rs9278145 rs3117141 rs3117143 rs3131085 rs3129788 rs3129178 rs3129112 rs3130773 rs3130777 rs3130715 rs3130746 rs3129173 rs3116830 rs3130831 rs3129104 rs3117339 rs3117337 rs3117326 rs3130834 rs3129682 rs9257800 rs442694 rs1535039 rs2523443 rs2143668 rs2206853 rs2746150 rs1234844 rs1233494 rs1233491 rs1233489 rs1233488 rs2523431 rs408623 rs389419 rs404240 rs413670 rs1235162 rs1233393 rs1233385 rs3131856 rs3131894 rs3116813 rs3098023 rs3094146 rs3115631 rs8321 rs9261290 rs2023473 rs2523978 rs2844789 rs1970 rs1573296 rs2157678 rs3094078 rs3129830 rs3094069 rs3094628 rs3130355 rs3129812 rs3132619 rs3094717 rs3132616 rs3094024 rs3130241 rs9262126 rs9262135 rs9262143 rs3132600 rs886420 rs3131781 rs1632863 rs1634716 rs1634721 rs1634726 rs3130544 rs3132510 rs3093958 rs3131618 rs3130614 rs3130612 rs1800628 rs3132450 rs3117582 rs3117581 rs3132449 rs9267531 rs9267539 rs9267544 rs9267549 rs3131383 rs3101018 rs3131381 rs3131380 rs3132445 rs3132443 rs3130484 rs3117573 rs3131379 rs3117574 rs3131378 rs3117575 rs3117577 rs3115672 rs3101017 rs3115671 rs3130490 rs3130491 rs915652 rs915651 rs2607014 rs2736425 rs2763980 rs681331 rs625421 rs553414 rs3130476 rs3130478 rs3130679 rs599707 rs9267574 rs9267578 rs501942 rs1265905 rs1270942 rs389884 rs433061 rs1150757 rs1150756 rs1150753 rs1150752 rs1269852 rs3130288 rs3132941 rs3130297 rs9267986 rs3132953 rs146576271 rs3132971 rs3115556 rs9268144 rs7775397 rs9268152 rs9268158 rs9268177 rs9268208 rs9268219 rs116667074 rs7751715 rs9268235 rs4392743 rs1265757 rs1265754 rs926593 rs2849018 rs910051 rs2395149 rs2894254 rs3129950 rs3129966 rs3129843 rs3129855 rs3129856 rs3135394 rs7383481 rs7748925 rs3135383 rs9268813 rs7763411
A*0201~B*4402~DRB1*0401 rs41268932 rs8192574
A*2902~B*4403~DRB1*0701 rs17438538 rs138004456 rs259948 rs2158287 rs140895602
A*0201~B*1501~DRB1*0401 rs2254620 rs2248477
A*0301~B*3501~DRB1*0101 rs114878174 rs116462901 rs114060326
A*3001~B*1302~DRB1*0701 rs117584100 rs117614998 rs117763669 rs17188127 rs118169754 rs117660163 rs117626418 rs117560270
A*6801~B*5802~DRB1*1201 rs139769355 rs140935623 rs142502724 rs139078823 rs188494350 rs190632432 rs188223233 rs185605280 rs192670335 rs146732044 rs149977238 rs145723731 rs138357895 rs143635849 rs146313629 rs141927933 rs192240318 rs143303179 rs146331717
A*6802~B*1510~DRB1*0301 rs149179383 30585632 30860027 rs189718524 rs116571463 rs190868814 rs192648574 rs114646793
A*2402~B*3906~DRB1*1406 rs183314533 rs182263994 rs145527047 rs146464979 rs140555963 rs187395094 rs187032832 rs141014788 rs147917883 rs146450193 rs144675567 rs141939372 rs181516751 rs147299635 rs143509564 rs2022080 rs146147481 rs184627290 rs191921146 rs192020142 rs187082223 rs145281491 rs141247523 rs144414718 rs139981571 rs139987643 rs146494367 rs148241446 rs183475257 rs150256027
A*3303~B*5801~DRB1*0301 rs77041685 rs74290517 rs79793531 rs77570173 rs75155700 rs79208225 31948194 rs77633711 rs76252543 rs75123148 rs76340303 rs77466974 rs76146382 rs142995350
A*3303~B*5801~DRB1*1302 rs139931346 rs117160266
A*1101~B*1502~DRB1*1202 rs191236154 rs182944420 rs183636239
A*3303~B*4403~DRB1*1302 rs117952863 rs3757334 rs118105893 rs117636370 rs116910299 rs117322208 rs137877109 rs3778623 rs117569516 rs3757335 rs41543014 rs17875374 rs117804857 rs117383541 rs117803875 rs118120376 rs117437606 rs117093916 rs118124047 rs116877062 rs117631086 rs117687301 rs118121140 rs117764398 rs118038522 rs140942506 rs187281546 rs118052715 rs140984763 rs117248408 rs117107378 rs117644051 rs147666549 rs147733073 rs117587759 rs140773477 rs117767616 rs111887699 rs146580867 rs117116885 rs117968416 rs116915508 rs112070079 rs117484768 rs144772989 rs118114439 rs117598591 rs143395858 rs138687400 rs117576077 rs118073417 rs117722286
A*0101~B*3701~DRB1*1001 rs150454006 rs145191873

Tag SNP haplotypes for Hapmap 1 populations[edit]

source: Broad Institute Tagger

Pop. HLA allele frequency tag SNP haplotype frequency rsquared dprime
CEU HLA-A*0101 0.189 rs1611635(T) & rs10947088(T) 0.183 0.964 1.00
CEU HLA-A*0201 0.328 rs2844821(G) & rs762324(C) 0.350 0.906 1.00
CEU HLA-A*0205 0.011 rs6906270(C) 0.011 1.000 1.00
CEU HLA-A*0206 0.006 rs3116820(G) & rs6457109(G) 0.011 0.497 1.00
CEU HLA-A*0301 0.094 rs9380122(T) & rs9259817(C) 0.100 0.939 1.00
CEU HLA-A*1101 0.039 rs29233(C) 0.039 1.000 1.00
CEU HLA-A*2301 0.017 rs3025623(T) & rs2534825(G) 0.017 1.000 1.00
CEU HLA-A*2402 0.089 rs3893538(C) & rs2523933(A) 0.094 0.935 1.00
CEU HLA-A*2403 0.006 rs362527(G) & rs4071986(T) 0.011 0.497 1.00
CEU HLA-A*2501 0.039 rs3835309(A) & rs3094121(A) 0.039 1.000 1.00
CEU HLA-A*2601 0.022 rs2301751(T) & rs4678(C) 0.022 1.000 1.00
CEU HLA-A*2902 0.017 rs7453068(A) & rs2844659(A) 0.017 1.000 1.00
CEU HLA-A*3001 0.006 rs11961013(G) 0.006 1.000 1.00
CEU HLA-A*3002 0.006 rs29243(C) 0.006 1.000 1.00
CEU HLA-A*3101 0.033 rs1061235(T) 0.033 1.000 1.00
CEU HLA-A*3201 0.028 rs1611578(G) & rs3130244(C) 0.028 1.000 1.00
CEU HLA-A*6801 0.033 rs1610714(G) & rs2571375(G) 0.033 1.000 1.00
CEU HLA-B*0702 0.183 rs2596438(G) & rs805288(C) 0.189 0.964 1.00
CEU HLA-B*0801 0.139 rs6457374(G) & rs2844535(C) 0.139 0.909 0.95
CEU HLA-B*1302 0.017 rs12191164(G) 0.017 1.000 1.00
CEU HLA-B*1401 0.006 rs12208550(G) 0.006 1.000 1.00
CEU HLA-B*1402 0.011 rs2524160(T) & rs9368673(C) 0.011 1.000 1.00
CEU HLA-B*1501 0.072 rs3094117(A) & rs3819294(A) 0.067 0.918 1.00
CEU HLA-B*1510 0.006 rs11969139(T) 0.006 1.000 1.00
CEU HLA-B*1801 0.039 rs3129996(G) & rs2523589(G) & rs2844575(C) 0.039 1.000 1.00
CEU HLA-B*2705 0.006 rs6919835(G) 0.011 0.497 0.99
CEU HLA-B*3501 0.050 rs2532934(A) & rs3905495(A) & rs2523685(G) 0.050 1.000 1.00
CEU HLA-B*3503 0.011 rs1264375(C) & rs1058026(C) & rs2857605(T) 0.011 1.000 1.00
CEU HLA-B*3701 0.011 rs2853931(A) & rs7772218(G) 0.011 1.000 1.00
CEU HLA-B*3801 0.006 rs2734331(G) & rs3129944(G) 0.011 0.497 1.00
CEU HLA-B*3905 0.006 rs3131382(G) 0.006 1.000 1.00
CEU HLA-B*3906 0.011 rs9468859(A) & rs2844603(A) 0.011 1.000 1.00
CEU HLA-B*4001 0.039 rs4711240(G) & rs1265110(A) 0.039 1.000 1.00
CEU HLA-B*4002 0.017 rs3819285(C) 0.017 1.000 1.00
CEU HLA-B*4101 0.006 rs2269708(T) 0.006 1.000 1.00
CEU HLA-B*4402 0.122 rs3130501(C) & rs2769(T) & rs2844533(T) 0.128 0.950 1.00
CEU HLA-B*4403 0.022 rs12526186(C) & rs7747738(A) 0.022 1.000 1.00
CEU HLA-B*4404 0.006 rs2524180(T) & rs7747738(A) 0.011 0.497 1.00
CEU HLA-B*4405 0.006 rs2516683(C) & rs2844685(T) 0.011 0.497 1.00
CEU HLA-B*4901 0.011 rs2394985(G) 0.011 1.000 1.00
CEU HLA-B*5001 0.017 rs915653(T) 0.017 1.000 1.00
CEU HLA-B*5101 0.028 rs2516675(C) & rs2844657(T) & rs4947296(C) 0.033 0.829 1.00
CEU HLA-B*5201 0.017 rs2517424(A) & rs12526820(C) 0.017 1.000 1.00
CEU HLA-B*5601 0.011 rs4122190(A) 0.011 1.000 1.00
CEU HLA-B*5701 0.061 rs2395029(T) 0.061 1.000 1.00
CEU HLA-B*5801 0.006 rs3130660(A) & rs1063635(A) 0.011 0.497 1.00
CEU HLA-C*0102 0.017 rs9380234(C) 0.017 1.000 1.00
CEU HLA-C*0202 0.022 rs1265100(G) & rs4122189(C) 0.022 1.000 1.00
CEU HLA-C*0303 0.061 rs1265100(A) & rs7745906(A) 0.056 0.904 1.00
CEU HLA-C*0304 0.039 rs4713391(C) & rs7745906(A) & rs3130434(C) 0.039 1.000 1.00
CEU HLA-C*0401 0.083 rs9461684(G) 0.083 1.000 1.00
CEU HLA-C*0501 0.117 rs3130955(C) & rs364415(A) & rs4151665(C) 0.117 1.000 1.00
CEU HLA-C*0602 0.117 rs887466(G) & rs4379333(C) 0.117 1.000 1.00
CEU HLA-C*0701 0.178 rs2524074(C) & rs7382297(C) 0.178 0.925 0.96
CEU HLA-C*0702 0.206 rs3132572(A) & rs2001181(A) 0.217 0.935 0.99
CEU HLA-C*0704 0.028 rs2524050(T) & rs2256583(G) 0.028 1.000 1.00
CEU HLA-C*0802 0.017 rs2524048(G) & rs2442719(G) 0.017 1.000 1.00
CEU HLA-C*1202 0.011 rs3869115(C) & rs396960(T) 0.011 1.000 1.00
CEU HLA-C*1203 0.017 rs3130457(A) & rs2248902(T) 0.017 1.000 1.00
CEU HLA-C*1402 0.017 rs2517439(A) & rs2240061(C) 0.017 1.000 1.00
CEU HLA-C*1502 0.028 rs3764808(G) & rs4379333(C) 0.028 1.000 1.00
CEU HLA-C*1601 0.033 rs7747738(G) 0.028 0.829 0.99
CEU HLA-C*1701 0.006 rs2269708(T) 0.006 1.000 1.00
CEU HLA-DQA*0101 0.133 rs6457614(A) & rs1794265(G) 0.133 1.000 1.00
CEU HLA-DQA*0102 0.239 rs14004(G) & rs6457594(A) 0.228 0.881 0.97
CEU HLA-DQA*0103 0.056 rs2273017(A) & rs2157051(G) 0.050 0.895 1.00
CEU HLA-DQA*0201 0.133 rs7745002(C) & rs2858333(G) & 6p0315(G) 0.133 0.906 0.95
CEU HLA-DQA*0301 0.228 rs3129883(C) & rs7745002(C) & rs3844313(G) 0.228 1.000 1.00
CEU HLA-DQA*0401 0.033 rs7743506(C) 0.033 1.000 1.00
CEU HLA-DQA*0501 0.178 rs10485326(T) & rs2040406(A) 0.172 0.962 0.99
CEU HLA-DQB*0201 0.156 rs4988889(G) 0.150 0.958 0.99
CEU HLA-DQB*0301 0.167 rs7744001(A) & rs2856691(C) 0.167 1.000 1.00
CEU HLA-DQB*0302 0.144 rs7454108(C) & rs2071876(C) 0.144 1.000 1.00
CEU HLA-DQB*0303 0.061 rs3834857(C) & rs2395533(T) 0.061 1.000 1.00
CEU HLA-DQB*0305 0.006 rs9267532(A) & rs707915(A) 0.011 0.497 1.00
CEU HLA-DQB*0402 0.033 rs7743506(C) 0.033 1.000 1.00
CEU HLA-DQB*0501 0.094 rs6457614(A) 0.094 1.000 1.00
CEU HLA-DQB*0502 0.022 rs1548306(A) & rs5875391(A) 0.022 1.000 1.00
CEU HLA-DQB*0503 0.039 rs1794265(G) 0.039 1.000 1.00
CEU HLA-DQB*0601 0.006 rs2858880(A) 0.006 1.000 1.00
CEU HLA-DQB*0602 0.200 rs3135388(G) 0.206 0.966 0.99
CEU HLA-DQB*0603 0.050 rs2395150(T) & rs3135461(G) 0.050 1.000 1.00
CEU HLA-DQB*0604 0.017 rs10573(A) & rs7766854(A) 0.017 1.000 1.00
CEU HLA-DQB*0609 0.006 rs6901092(A) 0.006 1.000 1.00
CEU HLA-DRB*0101 0.089 rs4947332(G) & rs6457614(C) 0.089 1.000 1.00
CEU HLA-DRB*0301 0.094 rs2040410(G) 0.083 0.872 0.99
CEU HLA-DRB*0401 0.089 rs6910071(C) & rs3817964(A) & rs660895(C) 0.117 0.739 1.00
CEU HLA-DRB*0402 0.006 rs3130071(T) & rs416352(A) 0.011 0.497 1.00
CEU HLA-DRB*0403 0.017 rs7454108(C) & rs206765(A) & rs399604(C) 0.017 1.000 1.00
CEU HLA-DRB*0404 0.106 rs2736157(A) & rs3115572(C) & rs2395533(T) 0.128 0.623 0.88
CEU HLA-DRB*0405 0.006 rs1057149(C) 0.011 0.497 0.99
CEU HLA-DRB*0407 0.011 rs7774197(G) & rs417812(T) 0.011 1.000 1.00
CEU HLA-DRB*0701 0.100 rs7745002(C) & rs2647087(G) & rs241398(C) 0.117 0.739 0.94
CEU HLA-DRB*0801 0.033 rs7743506(C) 0.033 1.000 1.00
CEU HLA-DRB*1001 0.006 rs4148871(T) & rs2071538(A) 0.011 0.497 1.00
CEU HLA-DRB*1101 0.050 rs434841(G) & rs1061172(G) & rs5875439(G) 0.050 1.000 1.00
CEU HLA-DRB*1103 0.011 rs4639334(T) & rs412735(A) & rs210180(T) 0.011 1.000 1.00
CEU HLA-DRB*1104 0.006 rs4713607(A) & rs12664430(A) 0.011 0.497 1.00
CEU HLA-DRB*1201 0.006 rs6901541(C) & rs6916742(A) 0.011 0.497 1.00
CEU HLA-DRB*1301 0.044 rs2395173(G) & rs2157051(G) 0.050 0.884 1.00
CEU HLA-DRB*1302 0.022 rs4434496(T) & rs6901541(T) 0.022 1.000 1.00
CEU HLA-DRB*1303 0.011 rs424232(A) & rs2050191(A) 0.011 1.000 1.00
CEU HLA-DRB*1401 0.033 rs2763979(G) & rs1794265(C) 0.033 1.000 1.00
CEU HLA-DRB*1404 0.006 rs805262(G) & rs1794265(C) 0.011 0.497 1.00
CEU HLA-DRB*1501 0.200 rs3135388(G) 0.206 0.966 0.99
CEU HLA-DRB*1502 0.006 rs2858880(A) 0.006 1.000 1.00
CEU HLA-DRB*1601 0.022 rs7452076(T) & rs6923504(G) 0.022 1.000 1.00
YRI HLA-A*0101 0.017 rs10807055(A) & rs2844775(A) 0.017 1.000 1.00
YRI HLA-A*0201 0.042 rs4713240(G) & rs3132682(C) 0.042 1.000 1.00
YRI HLA-A*0202 0.025 rs9261488(T) & rs3094636(C) 0.025 1.000 1.00
YRI HLA-A*0205 0.017 rs2523734(G) & rs3132672(T) 0.017 1.000 1.00
YRI HLA-A*0211 0.008 rs7452887(C) & rs968909(A) 0.017 0.496 1.00
YRI HLA-A*0301 0.125 rs2524024(A) 0.125 1.000 1.00
YRI HLA-A*2301 0.108 rs2524024(A) 0.108 1.000 1.00
YRI HLA-A*2424 0.008 rs1264362(C) 0.017 0.496 0.99
YRI HLA-A*2601 0.025 rs3823339(G) 0.025 1.000 1.00
YRI HLA-A*2902 0.017 rs7741100(G) & rs2523807(C) 0.017 1.000 1.00
YRI HLA-A*3001 0.092 rs1633005(T) & rs2057727(T) 0.092 1.000 1.00
YRI HLA-A*3002 0.050 rs2844846(A) & rs2517671(C) 0.050 1.000 1.00
YRI HLA-A*3201 0.008 rs3873243(C) 0.008 1.000 1.00
YRI HLA-A*3301 0.025 rs7749944(T) 0.025 1.000 1.00
YRI HLA-A*3303 0.108 rs6921921(A) & rs2523945(G) 0.108 1.000 1.00
YRI HLA-A*3402 0.042 rs1610606(C) & rs4959036(G) 0.042 1.000 1.00
YRI HLA-A*3601 0.142 rs259940(G) & rs261943(G) 0.142 1.000 1.00
YRI HLA-A*6602 0.017 rs3115592(A) & rs2523960(G) 0.017 1.000 1.00
YRI HLA-A*6801 0.017 rs2735068(C) & rs2524198(C) 0.017 1.000 1.00
YRI HLA-A*6802 0.058 rs6457116(C) 0.058 1.000 1.00
YRI HLA-A*7401 0.042 rs9468675(C) 0.042 1.000 1.00
YRI HLA-A*8001 0.008 rs1235162(T) 0.008 1.000 1.00
YRI HLA-B*0702 0.075 rs2523618(T) 0.075 1.000 1.00
YRI HLA-B*0801 0.008 rs1059612(C) 0.008 1.000 1.00
YRI HLA-B*1302 0.025 rs397596(A) 0.025 1.000 1.00
YRI HLA-B*1401 0.008 rs1264308(C) 0.017 0.496 0.99
YRI HLA-B*1402 0.008 rs2734331(A) 0.008 1.000 1.00
YRI HLA-B*1403 0.008 rs2524229(T) 0.017 0.496 0.99
YRI HLA-B*1503 0.058 rs3819294(A) & rs2844533(C) 0.058 1.000 1.00
YRI HLA-B*1510 0.083 rs3819294(A) & rs2523638(G) 0.083 1.000 1.00
YRI HLA-B*1516 0.008 rs7776044(A) & rs2736157(G) 0.017 0.496 1.00
YRI HLA-B*1801 0.050 rs1051791(C) 0.050 1.000 1.00
YRI HLA-B*3501 0.083 rs2249876(T) & rs1058026(C) & rs2844498(C) 0.083 1.000 1.00
YRI HLA-B*3903 0.008 rs3094111(A) & rs2233969(G) 0.017 0.496 1.00
YRI HLA-B*3910 0.008 rs6929434(T) 0.008 1.000 1.00
YRI HLA-B*4201 0.075 rs5875311(G) & rs2273017(G) 0.075 1.000 1.00
YRI HLA-B*4202 0.008 rs9469052(C) 0.017 0.496 0.99
YRI HLA-B*4403 0.017 rs2769(C) 0.017 1.000 1.00
YRI HLA-B*4501 0.017 rs7453631(T) 0.017 1.000 1.00
YRI HLA-B*4901 0.050 rs9368673(C) & rs11967289(T) 0.050 1.000 1.00
YRI HLA-B*5101 0.042 rs2523451(T) & rs4569(G) & rs379464(G) 0.033 0.793 1.00
YRI HLA-B*5201 0.083 rs2394401(A) & rs7747738(A) & rs2256965(T) 0.083 1.000 1.00
YRI HLA-B*5301 0.158 rs2844535(C) & rs6940467(G) 0.150 0.938 1.00
YRI HLA-B*5601 0.008 rs4122190(A) 0.008 1.000 1.00
YRI HLA-B*5702 0.008 rs2246626(G) & rs2071278(G) 0.017 0.496 1.00
YRI HLA-B*5703 0.025 rs7451258(C) & rs3998357(G) & rs2523586(T) 0.025 1.000 1.00
YRI HLA-B*5801 0.058 rs1058026(A) & rs2523608(T) & rs6929932(T) 0.067 0.867 1.00
YRI HLA-B*7801 0.008 rs3130116(T) 0.017 0.496 0.99
YRI HLA-B*8101 0.008 rs9261947(A) & rs2853925(C) 0.017 0.496 1.00
YRI HLA-C*0102 0.008 rs4122190(A) 0.008 1.000 1.00
YRI HLA-C*0202 0.092 rs6923313(G) & rs2243868(G) 0.092 1.000 1.00
YRI HLA-C*0302 0.042 rs2074488(G) 0.042 1.000 1.00
YRI HLA-C*0401 0.250 rs4386816(T) 0.250 1.000 1.00
YRI HLA-C*0501 0.008 rs7762619(T) 0.008 1.000 1.00
YRI HLA-C*0602 0.008 rs12198655(G) 0.017 0.496 0.99
YRI HLA-C*0701 0.133 rs3132499(A) & rs2524074(C) 0.133 1.000 1.00
YRI HLA-C*0702 0.058 rs9264731(A) 0.058 1.000 1.00
YRI HLA-C*0802 0.050 rs2524100(G) & rs652888(A) 0.050 1.000 1.00
YRI HLA-C*0804 0.050 rs1265180(A) & rs2523554(G) 0.050 1.000 1.00
YRI HLA-C*1203 0.008 rs6929434(T) 0.008 1.000 1.00
YRI HLA-C*1402 0.008 rs6457259(C) & rs2535293(C) 0.017 0.496 1.00
YRI HLA-C*1505 0.017 rs3216869(C) & rs7381371(T) 0.017 1.000 1.00
YRI HLA-C*1601 0.167 rs2844603(G) & rs2844586(A) 0.167 0.884 0.94
YRI HLA-C*1701 0.083 rs2524069(A) & rs5875311(G) & rs3096702(C) 0.075 0.892 1.00
YRI HLA-C*1801 0.017 rs2524040(G) & rs2524089(G) 0.017 1.000 1.00
YRI HLA-DQA*0101 0.100 rs3134605(A) & rs2858330(A) & rs1612904(A) 0.108 0.915 1.00
YRI HLA-DQA*0102 0.242 rs204996(G) & rs6457594(A) & rs1063355(A) 0.233 0.704 0.86
YRI HLA-DQA*0103 0.083 rs3135338(A) & rs2858867(T) & rs5875382(A) 0.083 1.000 1.00
YRI HLA-DQA*0201 0.150 rs3844313(A) & rs2647012(C) 0.150 1.000 1.00
YRI HLA-DQA*0301 0.058 rs5875382(G) & rs6457617(A) 0.058 1.000 1.00
YRI HLA-DQA*0401 0.133 rs4639334(C) & rs1061172(G) 0.133 1.000 1.00
YRI HLA-DQA*0501 0.233 rs4424079(G) & rs2284189(A) 0.233 0.822 0.91
YRI HLA-DQB*0201 0.275 rs4988889(G) 0.275 1.000 1.00
YRI HLA-DQB*0301 0.175 rs6928482(G) & rs1056315(A) 0.175 1.000 1.00
YRI HLA-DQB*0302 0.017 rs7454108(T) 0.017 1.000 1.00
YRI HLA-DQB*0402 0.108 rs2213586(T) & rs4947342(T) 0.108 1.000 1.00
YRI HLA-DQB*0501 0.125 rs6457614(A) 0.125 1.000 1.00
YRI HLA-DQB*0502 0.058 rs3129718(G) 0.058 1.000 1.00
YRI HLA-DQB*0503 0.025 rs1612904(A) & rs2856717(T) 0.025 1.000 1.00
YRI HLA-DQB*0602 0.100 rs5875382(G) & rs3134975(T) 0.117 0.841 1.00
YRI HLA-DQB*0603 0.058 rs3135006(T) & rs3918153(C) & rs210139(G) 0.067 0.867 1.00
YRI HLA-DQB*0604 0.017 rs3129848(T) & rs2858867(C) & rs1978029(T) 0.017 1.000 1.00
YRI HLA-DQB*0605 0.042 rs419132(G) & rs2157051(G) & rs5021448(T) 0.042 1.000 1.00
YRI HLA-DRB*0101 0.017 rs439844(G) & rs3135391(T) 0.017 1.000 1.00
YRI HLA-DRB*0102 0.033 rs2187818(C) & rs14004(T) 0.033 1.000 1.00
YRI HLA-DRB*0301 0.092 rs3129763(T) & rs9275229(T) & rs9277489(A) 0.083 0.713 0.89
YRI HLA-DRB*0302 0.092 rs3129878(G) & rs4599680(G) & rs7764856(A) 0.092 1.000 1.00
YRI HLA-DRB*0403 0.008 rs1800624(T) 0.008 1.000 1.00
YRI HLA-DRB*0701 0.125 rs1800624(T) & rs3828846(C) & rs2647045(A) 0.125 0.853 0.92
YRI HLA-DRB*0804 0.075 rs507778(A) & rs3129954(C) & rs1061172(G) 0.083 0.892 1.00
YRI HLA-DRB*0901 0.025 rs2242656(A) & rs1061808(T) & rs2395185(A) 0.025 1.000 1.00
YRI HLA-DRB*1101 0.058 rs2395150(T) & rs12191360(C) & rs4713559(T) 0.058 1.000 1.00
YRI HLA-DRB*1102 0.025 rs2395153(C) & rs241424(G) & rs2072915(A) 0.025 1.000 1.00
YRI HLA-DRB*1104 0.075 rs558702(A) & rs7744293(A) 0.050 0.649 1.00
YRI HLA-DRB*1201 0.017 rs4248166(C) & rs6918223(C) 0.017 1.000 1.00
YRI HLA-DRB*1301 0.083 rs3134942(G) & rs3763308(T) & rs7451962(C) 0.100 0.818 1.00
YRI HLA-DRB*1302 0.058 rs2157339(A) & rs7756467(T) 0.058 1.000 1.00
YRI HLA-DRB*1303 0.075 rs11756657(G) & rs2516049(C) & rs2856718(A) 0.075 1.000 1.00
YRI HLA-DRB*1327 0.008 rs2894239(G) & rs9368757(A) 0.017 0.496 1.00
YRI HLA-DRB*1335 0.008 rs2982277(C) 0.008 1.000 1.00
YRI HLA-DRB*1401 0.025 rs1612904(A) & rs2856717(T) 0.025 1.000 1.00
YRI HLA-DRB*1501 0.008 rs443623(A) 0.008 1.000 1.00
YRI HLA-DRB*1503 0.092 rs12191360(C) & rs4599680(A) 0.100 0.908 1.00
CHB HLA-A*0101 0.022 rs1264709(T) 0.022 1.000 1.00
CHB HLA-A*0201 0.233 rs892666(C) & rs4959037(A) & rs4678(C) 0.244 0.941 1.00
CHB HLA-A*0203 0.033 rs2844713(A) & rs2269706(T) 0.033 1.000 1.00
CHB HLA-A*0206 0.056 rs6457109(G) & rs9260988(A) 0.056 1.000 1.00
CHB HLA-A*0301 0.022 rs3130785(G) 0.022 1.000 1.00
CHB HLA-A*0302 0.022 rs1736924(G) & rs1557608(T) 0.022 1.000 1.00
CHB HLA-A*1101 0.233 rs2517754(C) & rs7745235(A) 0.233 1.000 1.00
CHB HLA-A*2402 0.156 rs2734984(A) & rs1611589(A) 0.156 1.000 1.00
CHB HLA-A*2601 0.011 rs3823339(G) 0.011 1.000 1.00
CHB HLA-A*3001 0.056 rs3218822(A) 0.056 1.000 1.00
CHB HLA-A*3101 0.033 rs3823318(C) & rs1061235(A) 0.033 1.000 1.00
CHB HLA-A*3201 0.022 rs9468692(C) 0.022 1.000 1.00
CHB HLA-A*3303 0.078 rs2524005(A) & rs2855591(A) 0.078 1.000 1.00
CHB HLA-A*6801 0.022 rs2844800(T) 0.022 1.000 1.00
CHB HLA-B*0705 0.011 rs2523480(C) 0.011 1.000 1.00
CHB HLA-B*0801 0.022 rs4248151(C) & rs3128982(C) 0.022 1.000 1.00
CHB HLA-B*1301 0.033 rs707913(G) & rs2844586(A) 0.033 1.000 1.00
CHB HLA-B*1302 0.056 rs7761138(G) & rs12212594(C) 0.056 1.000 1.00
CHB HLA-B*1501 0.089 rs2524178(G) & rs3819294(A) 0.100 0.878 1.00
CHB HLA-B*1502 0.011 rs3909184(C) & rs2844682(T) 0.011 1.000 1.00
CHB HLA-B*1511 0.011 rs2074491(T) 0.011 1.000 1.00
CHB HLA-B*1518 0.033 rs4084091(A) & rs3819294(A) 0.033 1.000 1.00
CHB HLA-B*3501 0.022 rs1264307(A) & rs3128982(C) 0.022 1.000 1.00
CHB HLA-B*3503 0.022 rs3130785(G) 0.022 1.000 1.00
CHB HLA-B*3701 0.011 rs4947332(G) 0.011 1.000 1.00
CHB HLA-B*3801 0.011 rs9295863(G) 0.011 1.000 1.00
CHB HLA-B*3802 0.033 rs2844725(A) & rs3828875(T) 0.033 1.000 1.00
CHB HLA-B*3901 0.011 rs1811197(T) & rs2844575(C) 0.011 1.000 1.00
CHB HLA-B*4001 0.122 rs2844580(G) & rs2523694(C) 0.111 0.898 1.00
CHB HLA-B*4002 0.011 rs6930444(G) & rs3130655(T) 0.011 1.000 1.00
CHB HLA-B*4006 0.044 rs3819299(C) & rs8283(T) 0.044 1.000 1.00
CHB HLA-B*4601 0.111 rs2243868(G) & rs2524227(A) & rs2857595(A) 0.100 0.889 1.00
CHB HLA-B*4801 0.044 rs4959069(C) 0.044 1.000 1.00
CHB HLA-B*5101 0.078 rs3905495(A) & rs7450800(C) & rs2471980(G) 0.067 0.847 1.00
CHB HLA-B*5201 0.044 rs1062470(G) & rs2844586(A) 0.044 1.000 1.00
CHB HLA-B*5401 0.056 rs3130786(A) & rs3819284(A) 0.056 1.000 1.00
CHB HLA-B*5601 0.011 rs3130977(G) & rs1063632(T) 0.011 1.000 1.00
CHB HLA-B*5701 0.011 rs3093726(T) 0.011 1.000 1.00
CHB HLA-B*5801 0.044 rs3134792(G) & rs4713518(A) 0.044 1.000 1.00
CHB HLA-B*5901 0.011 rs3094188(C) & rs1063632(T) 0.011 1.000 1.00
CHB HLA-B*6701 0.022 rs2239523(G) & rs4947248(C) 0.022 1.000 1.00
CHB HLA-B*8101 0.011 rs2507997(C) & rs3134954(C) 0.011 1.000 1.00
CHB HLA-C*0102 0.178 rs3834326(A) & rs4122190(A) 0.178 1.000 1.00
CHB HLA-C*0302 0.044 rs1265155(G) & rs4713438(T) 0.044 1.000 1.00
CHB HLA-C*0303 0.078 rs6457350(C) & rs2156875(T) 0.078 1.000 1.00
CHB HLA-C*0304 0.044 rs6457350(C) & rs4947248(C) 0.044 1.000 1.00
CHB HLA-C*0401 0.044 rs7451258(C) & rs12662501(A) 0.044 1.000 1.00
CHB HLA-C*0602 0.078 rs3130457(A) 0.078 1.000 1.00
CHB HLA-C*0702 0.200 rs2001181(A) 0.200 1.000 1.00
CHB HLA-C*0704 0.011 rs2395031(G) 0.011 1.000 1.00
CHB HLA-C*0801 0.144 rs2524100(A) 0.144 1.000 1.00
CHB HLA-C*1202 0.044 rs3094663(C) & rs2073723(T) 0.044 1.000 1.00
CHB HLA-C*1203 0.033 rs6929434(T) 0.033 1.000 1.00
CHB HLA-C*1402 0.044 rs3095301(T) & rs2073716(C) 0.044 1.000 1.00
CHB HLA-C*1502 0.056 rs7451258(C) 0.056 1.000 1.00
CHB HLA-DQA*0101 0.100 rs8365(C) & rs482044(C) & rs532098(C) 0.089 0.878 1.00
CHB HLA-DQA*0102 0.122 rs5875382(G) & rs1063355(A) 0.122 0.629 0.79
CHB HLA-DQA*0103 0.144 rs7744001(A) & rs1063355(A) & rs2187686(C) 0.133 0.911 1.00
CHB HLA-DQA*0201 0.067 rs7763805(C) & rs3844313(A) 0.056 0.824 1.00
CHB HLA-DQA*0301 0.322 rs2395533(T) & rs6903433(G) 0.300 0.901 1.00
CHB HLA-DQA*0401 0.022 rs1694112(A) & rs4711312(C) 0.022 1.000 1.00
CHB HLA-DQA*0501 0.122 rs4639334(C) & rs6908943(G) 0.122 1.000 1.00
CHB HLA-DQA*0601 0.078 rs1061172(G) & rs3129718(A) 0.078 1.000 1.00
CHB HLA-DQB*0201 0.111 rs4988889(G) 0.111 1.000 1.00
CHB HLA-DQB*0301 0.167 rs6928482(G) & rs1056315(A) 0.167 1.000 1.00
CHB HLA-DQB*0302 0.067 rs6906021(T) & rs9275184(G) 0.067 1.000 1.00
CHB HLA-DQB*0303 0.189 rs2395533(T) & rs2856683(T) 0.189 1.000 1.00
CHB HLA-DQB*0401 0.067 rs2077580(C) & rs2395533(T) & rs2300825(A) 0.067 1.000 1.00
CHB HLA-DQB*0402 0.033 rs2076528(A) & rs1694112(A) & rs6937034(A) 0.033 1.000 1.00
CHB HLA-DQB*0501 0.011 rs4947332(G) 0.011 1.000 1.00
CHB HLA-DQB*0502 0.078 rs7744001(G) & rs6906021(C) & rs2300825(G) 0.078 1.000 1.00
CHB HLA-DQB*0503 0.044 rs1794265(C) & rs241446(C) 0.044 1.000 1.00
CHB HLA-DQB*0601 0.144 rs7744001(A) & rs6928482(A) 0.144 1.000 1.00
CHB HLA-DQB*0602 0.044 rs3134975(T) & rs2621426(C) 0.044 1.000 1.00
CHB HLA-DQB*0603 0.011 rs3806155(T) 0.011 1.000 1.00
CHB HLA-DQB*0604 0.033 rs11758998(C) 0.033 1.000 1.00
CHB HLA-DRB*0301 0.067 rs5000803(A) & rs7769979(T) & rs3129299(G) 0.078 0.847 1.00
CHB HLA-DRB*0401 0.022 rs2239705(T) & rs2395175(T) 0.022 1.000 1.00
CHB HLA-DRB*0403 0.033 rs2075800(T) & rs2395175(T) 0.033 1.000 1.00
CHB HLA-DRB*0404 0.011 rs9404991(A) 0.011 1.000 1.00
CHB HLA-DRB*0405 0.078 rs3129878(G) & rs2516049(C) 0.078 1.000 1.00
CHB HLA-DRB*0410 0.011 rs4713521(T) & rs3130267(C) 0.011 1.000 1.00
CHB HLA-DRB*0701 0.067 rs3129859(G) & rs2395177(C) 0.056 0.824 1.00
CHB HLA-DRB*0801 0.022 rs4713479(A) & rs2763982(G) 0.022 1.000 1.00
CHB HLA-DRB*0802 0.022 rs11757862(A) & rs1044506(C) 0.022 1.000 1.00
CHB HLA-DRB*0803 0.089 rs3129859(C) & rs1041885(T) & rs154984(C) 0.100 0.878 1.00
CHB HLA-DRB*0901 0.178 rs2395185(A) & rs2516049(T) 0.178 1.000 1.00
CHB HLA-DRB*1001 0.011 rs4947332(G) 0.011 1.000 1.00
CHB HLA-DRB*1101 0.033 rs4639334(T) & rs1383261(G) 0.033 1.000 1.00
CHB HLA-DRB*1201 0.056 rs2105903(T) & rs2856718(A) & rs206777(C) 0.056 1.000 1.00
CHB HLA-DRB*1202 0.078 rs6916742(A) & rs646984(G) & rs4947342(C) 0.078 1.000 1.00
CHB HLA-DRB*1301 0.011 rs3873444(C) 0.011 1.000 1.00
CHB HLA-DRB*1302 0.033 rs11758998(C) 0.033 1.000 1.00
CHB HLA-DRB*1401 0.044 rs1799964(A) & rs3129961(G) & rs9469185(A) 0.044 1.000 1.00
CHB HLA-DRB*1407 0.011 rs4248157(C) 0.011 1.000 1.00
CHB HLA-DRB*1444 0.011 rs429853(G) & rs3129949(T) 0.011 1.000 1.00
CHB HLA-DRB*1501 0.067 rs7773756(T) & rs6903608(G) & rs620202(C) 0.067 1.000 1.00
CHB HLA-DRB*1502 0.022 rs2858880(A) 0.022 1.000 1.00
CHB HLA-DRB*1602 0.022 rs7769073(T) & rs2227139(A) 0.022 1.000 1.00

There are other HLA genes that have no significance or functional variants, but may be useful markers, such as: DR pseudogenes B7-B9.

Links:

Retrieved from "https://www.SNPedia.com/index.php?title=HLA&oldid=1163907"
Powered by MediaWiki
Powered by Semantic MediaWiki
Powered by the NCBI