Rs6457617

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is asnp
is mentioned by
dbSNPrs6457617
hapmaprs6457617
hgdprs6457617
ensemblrs6457617
gopubmedrs6457617
scholarrs6457617
googlers6457617
pharmgkbrs6457617
hgvbaseg2prs6457617
medrefsnprs6457617
23andMers6457617
SNP Nexus

Chromosome6
Orientationplus
Position32771828
GenotypeEffect
rs6457617(T;T)5.2x risk of rheumatoid arthritis
rs6457617(C;T)2.3x risk of rheumatoid arthritis
rs6457617(C;C)normal


Genotypes Magnitude Summary
Rs6457617(C;C) 00 normal
Rs6457617(C;T) 22 2.3x risk of rheumatoid arthritis
Rs6457617(T;T) 2.12.1 5.2x risk of rheumatoid arthritis

rs6457617 has been reported in a large study to be associated with rheumatoid arthritis. This SNP is reported to be the most statistically significant of many SNPs similarly located in the MHC region.

The risk allele (oriented to the dbSNP entry) is (T); the odds ratio associated with heterozygotes is 2.36 (CI 1.97-2.84), and for homozygotes, 5.21 (CI 4.31-6.30). [PMID 17554300]

? (C;C) (C;T) (T;T)
GWAS snp
PMID [PMID 18668548]
Trait Rheumatoid arthritis
Title Genome-wide association study of rheumatoid arthritis in the Spanish population: KLF12 as a risk locus for rheumatoid arthritis susceptibility
Risk Allele
P-val 1.0000000000000001E-9
Odds Ratio NR NR


[PMID 19714643] TRAF1 polymorphisms associated with rheumatoid arthritis susceptibility in Asians and in Caucasians