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Magnitude

From SNPedia
(Redirected from Help (magnitude))

See also Max Magnitude, Genotype, Genoset and Repute and Promethease/Learn_More

Magnitude is a subjective measure of interest. Over time it should be adjusted up or down by the community. It is generally interpreted as follows...

Magnitude Description
0 You have the common genotype, for which nothing interesting is known.
0.1 You have the common genotype, but its interesting that this varies for others
1 Semi-plausible but not very exciting
(blank) No one has yet assigned a magnitude. Treated as a 1.
2 looks interesting enough to be worth reading
2.1 hmm, interesting
3 Probably worth your time
4 Male/Female sex calls, used for QC, anything above this is definitely something you should pay attention to
10 Really significant information!

Numbers bigger than 10 are allowed and expected in the future. Since User:Watson and User:Steven Pinker requested not to learn their APOE4 gs216 status that serves as useful a landmark in the scale. Several rare genotypes are higher magnitude. The genotypes with highest magnitude are

 MagnitudeReputeSummary
i4000378(I;I)10BadBRCA1 (breast cancer) 5382insC
rs387907235(T;T)9.1BadLipoid congenital adrenal hyperplasia (LCAH); treatment required
rs193922393(-;-)9.1BadLipoid congenital adrenal hyperplasia (LCAH); treatment required
rs137852690(T;T)9.1BadLipoid congenital adrenal hyperplasia (LCAH); treatment required
rs137852689(C;C)9.1BadLipoid congenital adrenal hyperplasia (LCAH); treatment required
rs104894090(T;T)9.1BadLipoid congenital adrenal hyperplasia (LCAH); treatment required
rs104894089(A;A)9.1BadLipoid congenital adrenal hyperplasia (LCAH); treatment required
rs104894087(A;A)9.1BadLipoid congenital adrenal hyperplasia (LCAH); treatment required
rs104894086(A;A)9.1BadLipoid congenital adrenal hyperplasia (LCAH); treatment required
rs104894086(T;T)9.1BadLipoid congenital adrenal hyperplasia (LCAH); treatment required
... further results

The genosets with the highest magnitude are

 MagnitudeReputeSummary
Gs14910Testing for orientation issues
Gs3007Data Quality issue. Your data provider is reporting heterozygosity on the Y chromosome.
Gs3037WeGene quality control issues.
Gs3066.5BadPoor metabolizer of fluoropyrimidines (e.g. 5-fluorouracil, capecitabine or tegafur).
Gs2676APOE1/APOE1
Gs2166Bad2 copies of the APOE-ε4 allele
Gs2286BadSickle cell affected
Gs3125.5BadIntermediate metabolizer of fluoropyrimidines (such as 5-fluorouracil and capecitabine).
Gs1215BadDR3/4-DQ8 individual at high risk for type-1 diabetes
Gs3055BadLikely carrier of one PiS and one PiZ Alpha-1 Antitrypsin (SERPINA1) alleles; A1AT deficiency
... further results

See also the related concept Repute.