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Genoset

From SNPedia

A genoset refers to a defined set of genotypes; we have coined the term to represent the combination of alleles at 2 or more loci, especially when they are not contiguous along a chromosome. Typically, these are then related to a medical (or ancestral) consequence that arises only when a particular combination of SNPs is inherited.

Promethease understands this criteria syntax.

More information about genosets can be found in the related SNPedia blog post. Note that genosets themselves are boolean, not quantitative; each genoset is either true (present) or false (absent) in an individual, based on the genoset's criteria, in the same way that a genotype (or allele) is either present or absent. Note that if a DNA microarray platform lacks a given SNP, genosets that require it (that SNP) will not return a result during a Promethease evaluation.

Most Significant

 ReputeMagnitudeSummaryModification date
"Modification date" is a predefined property that corresponds to the date of the last modification of a subject and is provided by Semantic MediaWiki.
Gs14910Testing for orientation issues3 June 2017 01:13:36
Gs3007Data Quality issue. Your data provider is reporting heterozygosity on the Y chromosome.23 October 2016 09:50:25
Gs3037WeGene quality control issues.8 June 2016 05:40:37
Gs306Bad6.5Poor metabolizer of fluoropyrimidines (e.g. 5-fluorouracil, capecitabine or tegafur).25 May 2017 00:56:35
Gs2676APOE1/APOE15 November 2016 18:42:06
Gs216Bad62 copies of the APOE-ε4 allele5 December 2017 19:38:24
Gs314Bad6MUTYH-associated polyposis (and colon cancer risk)24 December 2017 19:56:29
Gs228Bad6Sickle cell affected3 June 2017 01:37:39
Gs312Bad5.5Intermediate metabolizer of fluoropyrimidines (such as 5-fluorouracil and capecitabine).25 May 2017 01:02:36
Gs121Bad5DR3/4-DQ8 individual at high risk for type-1 diabetes21 October 2011 06:04:16
... further results


Most Recently Active

 ReputeMagnitudeSummaryModification date
"Modification date" is a predefined property that corresponds to the date of the last modification of a subject and is provided by Semantic MediaWiki.
Gs316Bad3.8Data Quality issue8 February 2018 15:12:12
Gs2562.5carrier for a type of blue eyes8 February 2018 09:30:16
Gs224Bad3Two copies of GCH1 variant associated with lower levels of tetrahydrobiopterin30 January 2018 16:29:07
Gs246Good2APOE E3/E34 January 2018 01:51:12
Gs299Bad1.5Too common. Prone to Gout and possibly HLA-58011 January 2018 18:16:58
Gs314Bad6MUTYH-associated polyposis (and colon cancer risk)24 December 2017 19:56:29
Gs122Bad3.17x risk of male baldness24 December 2017 19:28:56
Gs2373.1Blue eyes are more likely13 December 2017 15:49:51
Gs317Good2Parkinson's risk might be decreased depending upon determination of haplotype phase12 December 2017 04:42:48
Gs315Good2Reduced risk of PD in a haplotype with the C2 variant in the TF gene12 December 2017 02:37:47
... further results


You can create a new genoset by clicking that link and filling in the form. But you'll still need to populate the criteria syntax.