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Possibly wrong risk allele[edit]

It seem that the risk allele in the GWAS box is wrong. This is obvious since the genotypes for rs3825942 only involves C and T. Inspecting the reference, it is the rs1048661 SNP that uses the A;G alleles. I have now corrected that, please double check. See: http://www.sciencemag.org/cgi/content/full/317/5843/1397 where they still refer to using T;G in this snip!? In fact the PharmGKB annotation text need to be changed as well, but this might be an automatic (bot) entry, so I'll leave that untouched. E:V:A 20:21, 27 September 2010 (UTC)

User:SNPediaBot will preserve any changes made by others, so please do make any changes you see fit. Cariaso 22:14, 27 September 2010 (UTC)

The ClinVar box seems to be wrong now. -- 11:02, 17 October 2013 (UTC)

It says: Risk rs3825942(A;A) Normal rs3825942(G;G)

This is (because of the orientation) equivalent to: Risk rs3825942(T;T) Normal rs3825942(C;C)

The risk allele is C, not T, so IMHO the ClinVar box needs to be changed to: Risk rs3825942(G;G) Normal rs3825942(A;A)

-- 11:30, 17 October 2013 (UTC)

agreed. I've made some changes to accomodate this. I believe all of the CLNSIG::255 pages may be affected
If it's 100% consistent I can handle it automatically, but I suspect it won't be that easy.
--- cariaso 23:27, 17 October 2013 (UTC)