rs3790844
From SNPedia
| Orientation | minus |
| Stabilized | minus |
| Geno | Mag | Summary |
|---|---|---|
| (C;C) | 2 | reduced risk (0.59x) of pancreatic cancer |
| (C;T) | 1.5 | slightly reduced risk (0.77x) for pancreatic cancer |
| (T;T) | 0 | common/normal |
| Reference | GRCh38 38.1/141 |
| Chromosome | 1 |
| Position | 200038304 |
| Gene | NR5A2 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs3790844 |
| dbSNP (classic) | rs3790844 |
| ClinGen | rs3790844 |
| ebi | rs3790844 |
| HLI | rs3790844 |
| Exac | rs3790844 |
| Gnomad | rs3790844 |
| Varsome | rs3790844 |
| LitVar | rs3790844 |
| Map | rs3790844 |
| PheGenI | rs3790844 |
| Biobank | rs3790844 |
| 1000 genomes | rs3790844 |
| hgdp | rs3790844 |
| ensembl | rs3790844 |
| geneview | rs3790844 |
| scholar | rs3790844 |
| rs3790844 | |
| pharmgkb | rs3790844 |
| gwascentral | rs3790844 |
| openSNP | rs3790844 |
| 23andMe | rs3790844 |
| SNPshot | rs3790844 |
| SNPdbe | rs3790844 |
| MSV3d | rs3790844 |
| GWAS Ctlg | rs3790844 |
| GMAF | 0.3453 |
| Max Magnitude | 2 |
| ? | (C;C) (C;T) (T;T) | 28 |
|---|---|---|
|
| ||
| This SNP has been recognized by the Coriell Personalized Medicine Collaborative ICOB.
|
| GWAS snp | |
|---|---|
| PMID | [PMID 20101243 ]
|
| Trait | Pancreatic cancer |
| Title | A genome-wide association study identifies pancreatic cancer susceptibility loci on chromosomes 13q22.1, 1q32.1 and 5p15.33 |
| Risk Allele | T |
| P-val | 2E-10 |
| Odds Ratio | 1.30 [1.19-1.41] |
23andMe reports that the G allele of this SNP appears to lower the risk of pancreatic cancer. [PMID 20101243]
[PMID 20686608] Genome-wide association study of pancreatic cancer in Japanese population.
