Gbrowse
https://s3.amazonaws.com/promethease/files/gbrowse/SNPedia.gff
Originally announced in the blog Dec 2007 SNPedia has a gff formatted version which can be used with Gbrowse. This has also been reported by openhelix.
Visit a gbrowse such as User:Watson at
or link directly into HapMap at a specific rs# such as
At the bottom of the page look for the text: Remote Annotation URL then provide
https://s3.amazonaws.com/promethease/files/gbrowse/SNPedia.gff
pick an interesting coordinate such as chr8:128504220..128604219 which is part of 8q24 or jump to a snp by rs# then zoom out. Try
- set Scroll/Zoom=40kbp (upper right)
- set Scroll/Zoom=100kb (upper right)
YanHuang also exists http://yh.genomics.org.cn/mapview.jsp but seem to have trouble supporting this.
SNPs in SNPedia are usually mapped to whatever is current by User:JlickBot which as of June 2016 means GRCh38 38.2/147 http://www.ncbi.nlm.nih.gov/genome/tools/remap may be helpful if you need to map to something else
