Rs3765598
From SNPedia
| is a | snp |
| is | mentioned by |
| dbSNP | rs3765598 |
| hapmap | rs3765598 |
| hgdp | rs3765598 |
| ensembl | rs3765598 |
| gopubmed | rs3765598 |
| scholar | rs3765598 |
| rs3765598 | |
| pharmgkb | rs3765598 |
| hgvbaseg2p | rs3765598 |
| medrefsnp | rs3765598 |
| 23andMe | rs3765598 |
| SNP Nexus |
| Gene | PTPN22 |
| Chromosome | 1 |
| Orientation | plus |
| Position | 114394463 |
| Reference | GRCh37 37.1/131 |
| Genotype | Effect |
|---|---|
| rs3765598(C;C)* | ? |
| rs3765598(C;T)* | ? |
| rs3765598(T;T)* | ? |
| ? | (C;C) (C;T) (T;T) | 28 |
|---|---|---|
|
| ||
| Rs3765598 | |
|---|---|
| PubMed | [PMID 16175503] |
| Affy Probeset | SNP_A-1962697 |
| Affy Orientation | same |
| On GW 5.0 | 1 |
| Alleles A/B | C/T |
| Ancestral | C |
| Population | Caucasian |
| Allele | T |
| Case Freq. | 0.21 |
| Control Freq. | 0.16 |
| Odds Ratio Het | |
| Odds Ratio Hom | |
| Odds Ratio All | 1.40 |
| Disease | Rheumatoid Arthritis (RA) |
rs3765598 is in linkage disequilibrium with a polymorphism that increases susceptibility to Rheumatoid Arthritis 1.40 times for carriers of the T allele [PMID 16175503]
