Rs1800471

From SNPedia

Jump to: navigation, search
is asnp
is mentioned by
dbSNPrs1800471
hapmaprs1800471
hgdprs1800471
ensemblrs1800471
gopubmedrs1800471
scholarrs1800471
googlers1800471
pharmgkbrs1800471
hgvbaseg2prs1800471
medrefsnprs1800471
23andMers1800471
SNP Nexus

GeneTGFB1
Chromosome19
Orientationminus
Position46550715
GenotypeEffect
rs1800471(C;C)
rs1800471(C;G)*?
rs1800471(G;G)*?


Genotypes Magnitude Summary
Rs1800471(C;C) 00
rs1800471 encodes a change at codon 25 of the TGFB1 gene. It is reported to predispose several organs to fibrosis, and in relation to Crohn's disease, it was associated with stricturing Crohn's disease (odds ratio 2.63, CI: 1.16-5.88, p=0.01) and a shorter time to intestinal resection (p = 0.06) in a study of several hundred Australian patients.[PMID 17047091]
Neighborrs1982073
Distance45


[PMID 19258388] Genetic variation in the transforming growth factor-{beta}1 gene is associated with susceptibility to IgA nephropathy.

[PMID 19380441] Single Nucleotide Polymorphism at rs1982073:T869C of the TGF{beta}1 Gene Is Associated With the Risk of Radiation Pneumonitis in Patients With Non-Small-Cell Lung Cancer Treated With Definitive Radiotherapy

PharmGKBPA161145114
NameTGFB1:Arg25Pro, TGFB1:914G>C, TGFB1:Ex1-282G>C, TGFB1:G915C, TGFB1:GC915
AnnotationIn conjunction with polymorphism at codon 10, this SNP defines high-, medium- or low-producer haplotype. The Arg allele is associated with higher blood pressure. The C allele is associated with susceptibility to EBV-associated post-transplant lymphoproliferative disorder. The C allele is associated with susceptibility to chronic periodontitis; The G allele may be associated with brucellosis susceptibility. This SNP may play a role in liver graft acceptance. It may be associated with longevity in an Italian population, and it may be associated with clefts of the lip, alveolus and palate.
GeneTGFB1
FeatueExon/NonSyn
EvidencePubMed ID:12850397; PubMed ID:15212689; PubMed ID:15569360; PubMed ID:17157217; PubMed ID:17184296; PubMed ID:17700165
Drugs
DiseasesBrucellosis, Cleft Lip, Cleft Palate, Graft vs Host Disease, Hypertension, Periodontitis
Curation LevelCurated