Rs10516487

From SNPedia

Jump to: navigation, search
is asnp
is mentioned by
dbSNPrs10516487
hapmaprs10516487
hgdprs10516487
ensemblrs10516487
gopubmedrs10516487
scholarrs10516487
googlers10516487
pharmgkbrs10516487
hgvbaseg2prs10516487
medrefsnprs10516487
23andMers10516487
SNP Nexus

GeneBANK1
Chromosome4
Orientationminus
Position102970098
GenotypeEffect
rs10516487(C;C)*?
rs10516487(C;T)*?
rs10516487(T;T)*?


rs17266594 rs10516487 rs3733197 gene associated with systemic lupus erythematosus.[PMID 18204447]

The association between rs10516487 and lupus was replicated in a study of 1892 European-derived SLE patients and 2652 European-derived controls; the odds ratio observed was 1.22 (CI: 1.11-1.34, corrected p-value=2.59 x 10e-5).[PMID 19339986]

? (C;C) (C;T) (T;T)
Neighborrs17266594
Distance154
GWAS
SNP rs10516487
PubMedID [PMID 18204447]
Condition Systemic lupus erythematosus
Gene BANK1
Risk Allele G
pValue 4.00E-010
OR 1.38
95% CI 1.25-1.53


Related to B-CELL SCAFFOLD PROTEIN WITH ANKYRIN REPEATS 1; BANK1 according to omim 610292. See also


[PMID 19644876] Association of STAT4 and BLK, but not BANK1 or IRF5, with primary antiphospholipid syndrome

[PMID 19815934] BANK1 functional variants are associated with susceptibility to diffuse systemic sclerosis in Caucasians

PharmGKBPA161925607
NameBANK1: R61H
AnnotationIn a genome-wide scan an association between systemic lupus erythematosus and this nonsynonymous SNP in the BANK1 gene was identified.
GeneBANK1
Featue
EvidencePubMed ID:18204447
Drugs
DiseasesLupus Erythematosus, Systemic
Curation LevelCurated

[PMID 19877059] BANK1 is a genetic risk factor for diffuse cutaneous systemic sclerosis and has additive effects with IRF5 and STAT4