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From SNPedia

According to this PubMed article, the double G allele of this SNP corresponds to a significantly higher waist-hip ratio in women with PCOS. PCOS women with the GG genotype also had significantly higher QChol/HDL and LDL levels. Despite this, the G allele correlates with a lower risk of PCOS.

This PubMed abstract confirms the G allele correlating with a lower risk of PCOS.