Alzheimer's disease, gene set

[PMID 28323831] created a polygenic hazard score to arrive at age of onset of AD using the large IGAP dataset and other replications.

SNP	Chromosome	Gene	Minor Allele	Risk Allele	Beta log HR	Inside the gene?
epsilon 2	19	APOE	e2=0.07	--	-0.47	Yes
epsilon 4	19	APOE	e4=0.14	e4	1.03	Yes
rs4266886	1	CR1	T=0.1426/714	T	-0.09	intron
rs61822977	1	CR1	A=0.4091/2049	G	-0.08	intron
rs6733839	2	BIN1	T=0.3950/1978	T	-0.15	intron
rs10202748	2	INPP5D	C=0.2704/1354	C	-0.06	intron
rs115124923	6	HLA-DRB5	A=0.1554/778	A	0.17	No
rs115675626	6	HLA-DQB1	A=0.1104/553	A	-0.11	No
rs1109581	6	GPR115	T=0.2452/1228	T	-0.07	Intron
rs17265593	7	BCO43356	T=0.2726/1365	T	0.23	No
rs259283	7	BCO43356	A=0.3385/1695	C	0.28	Intron
rs1476679	7	ZCWPW1	C=0.2115/1059	C	0.11	Intron
rs78571833	7	AL833583 EPHA1-AS1	C=0.0250/125	C	0.14	Intron
rs12679874	8	PTK2B	G=0.4555/2281	G	-0.09	Intron
rs2741342	8	CHRNA2	T=0.2941/1473	T	0.09	Intron
rs7831810	8	CLU	A=0.4012/2009	G	0.09	Intron
rs1532277	8	CLU	T=0.2360/1182	T	0.21	Intron
rs9331888	8	CLU	G=0.3335/1670	G	0.16	Intron
rs7920721	10	CR5950071	G=0.2698/1351	G	-0.07	Intron
rs3740688	11	SPI1	G=0.3608/1807	G	0.07	Intron
rs7116190	11	MS4A6A	A=0.2879/1442	A	0.08	No
rs526904	11	PICALM	T=0.3263/1634	T	-0.20	No
rs543293	11	PICALM	A=0.2923/1464	A	0.30	No
rs11218343	11	SORL1	C=0.1090/546	C	0.18	Intron
rs6572869	14	FERMT2	A=0.2754/1379	A	-0.11	Intron
rs12590273	14	SLC24A4	C=0.0917/459	C	0.10	Intron
rs7145100	14	abParts	C=0.1460/731	C	0.08	Yes
rs74615166	15	TRIP4	C=0.0074/37	C	-0.23	Intron
rs2526378	17	BZRAP1	A=0.4722/2365	G	0.09	Intron
rs117481827	19	C19orf6	C=0.0469/235	C	-0.09	Yes, RNA noncoding
rs7408475	19	ABCA7	G=0.2608/1306	G	0.18	Intron
rs3752246	19	ABCA7	G=0.1745/874	G	-0.25	3' UTR
rs7274581	20	CASS4	C=0.0940/471	C	0.10	Intron