User:David Ewing Duncan

Public Genomes
Summary	Full genome from Complete Genomics, but also microarrays from 23andMe, Navigenics, and deCODEme

Promethease	report
Summary	pooled
Platform

Promethease	report
Summary	Full genome sequence
Platform	Complete Genomics

Promethease	report
Summary
Platform	23andMe v2

Promethease	report
Summary
Platform	deCODEme

Promethease	report
Summary
Platform	Navigenics

David Ewing Duncan is the author of Experimental Man: What one man’s body reveals about his future, your health, and our toxic world. He's written about SNPedia for an MIT Technology Review article. He's also Personal Genome Project participant 13. His pooled and various platform specific reports are updated regularly.

In June 2011, User:David Ewing Duncan as part of the Personal Genome Project received data back from Complete Genomics masterVarBeta format. This does not report his 'normals' enabling a report with 5243 genotypes. Contrast that to the 11627 possible on his pooled microarrays or the 16k found in User:NA06985 or User:NA18504 which included Complete Genomics dbSNP files. By July the dbSNPAnnotated file provided 19,379 genotypes for the 23,233 snps then in SNPedia. Pooling all of his platforms provides 20,949 genotypes with at most 196 genotypes conflicting.

[edit] rs1333049

Since it's on the positive strand we wouldn't expect this

PGP via Complete Genomics

bzgrep rs1333049 ../Complete_Genomics_var_file.bz2
9664547	2	1	chr9	22125502	22125503	snp	G	75		dbsnp.88:rs1333049
9664547	2	2	chr9	22125502	22125503	snp	G	123		dbsnp.88:rs1333049

23andMe v2

zipgrep rs1333049 ~/dev/bots/insiders/inputs/genome_David_Duncan_20090607120612.zip
genome_David_Duncan_20090607120612.txt:rs1333049	9	22115503 	CC

Navigenics

grep rs1333049 ~/dev/bots/insiders/inputs/Duncan\ Affy\ 6.0.txt 
SNP_A-2191519 rs1333049 CC chr9 22115503