Rs3802842

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dbSNPrs3802842
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SNP Nexus

GeneLOC120376
Chromosome11
Orientationplus
Position110676918
GenotypeEffect
rs3802842(A;A)normal
rs3802842(A;C)1.17x increased risk of colorectal cancer
rs3802842(C;C)>1.17x increased risk of colorectal cancer


Genotypes Magnitude Summary
Rs3802842(A;A) 00 normal
Rs3802842(A;C) 1.17x increased risk of colorectal cancer
Rs3802842(C;C) >1.17x increased risk of colorectal cancer
rs3802842 is a SNP in a region of ch 11q23.1 that has been associated with some cancers.

IN a study of over 10,000 cases of colorectal cancer, rs3802842(C) was associated with increased risk (odds ratio 1.17, CI: 1.12-1.22, p = 1.08 x 10e-12). Additional SNPs in chromosomal regions 8q21, 8q24, 10p14, 11q, 15q13.3 and 18q21 can be combined additively to produce an overall risk, with an average odds ratio per risk allele of 1.19.[PMID 18753146]

? (A;A) (A;C) (C;C)
GWAS
SNP rs3802842
PubMedID [PMID 18372901]
Condition Colorectal cancer
Gene Intergenic
Risk Allele C
pValue 6.00E-010
OR 1.11
95% CI 1.08-1.15


Related to COLORECTAL CANCER, SUSCEPTIBILITY TO, 7; CRCS7 according to omim 612232. See also


[PMID 19843678] Enrichment of Low Penetrance Susceptibility Loci in a Dutch Familial Colorectal Cancer Cohort

PharmGKBPA162356761
Name
AnnotationGWAS Results: Genome-wide association scan identifies a colorectal cancer susceptibility locus on 11q23 and replicates risk loci at 8q24 and 18q21 (Initial Sample Size: 981 cases, 1,002 controls; Replication Sample Size: 16,476 cases, 15,351 controls; Risk Allele: rs3802842-C).
GeneC11orf92
Featue
EvidencePubMed ID:18372901; Web Resource:http://www.genome.gov/gwastudies/
Drugs
DiseasesColorectal Neoplasms
Curation LevelNon-Curated