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Rs1892534

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Orientationminus
Geno Mag Summary
(A;A) 1.2 Lower C-Reactive Protein levels. 1.2x increased risk overall for cancers.
(A;G) 1.05 Normal C-Reactive Protein levels. Very slight (x1.05) increase in overall risk for cancers.
(G;G) 2 Slightly higher C-Reactive Protein levels. Possibly slightly lower cancer risk.
ReferenceGRCh38 38.1/141
Chromosome1
Position65640261
is asnp
is mentioned by
dbSNPrs1892534
PheGenIrs1892534
nextbiors1892534
hapmaprs1892534
1000 genomesrs1892534
hgdprs1892534
ensemblrs1892534
gopubmedrs1892534
geneviewrs1892534
scholarrs1892534
googlers1892534
pharmgkbrs1892534
gwascentralrs1892534
openSNPrs1892534
23andMers1892534
23andMe allrs1892534
SNP Nexus

SNPshotrs1892534
SNPdbers1892534
MSV3drs1892534
GMAF0.4509
Max Magnitude2
rs1892534 is a SNP that was originally associated with C-reactive protein levels, and given other findings that suggest C-reactive protein levels may be predictive of cancer risk, was thought to be linked to cancer risk.

A large study pooling data from 3 Finnish studies totaling over 18,000 individuals concluded that while the rs1892534(A) allele was not likely to be causative (relative to cancer), it is associated with increased risk for cancer overall. The odds ratio for 1 or 2 such alleles was 1.05 (CI: 0.90 - 1.23) and 1.2 (CI: 1.01 - 1.42) overall. Two other CRP SNPs (rs1169300 and rs2464196) were specifically associated with increased lung cancer risk. CRP SNPs were not associated with colorectal, prostate or breast cancer risk.[PMID 20727736]

? (A;A) (A;G) (G;G) 28
GWAS
SNP rs1892534
PubMedID [PMID 18439548OA-icon.png]
Condition C-reactive protein
Gene LEPR
Risk Allele G
pValue 7.00E-021
OR
95% CI




[PMID 18439552OA-icon.png] Polymorphisms of the HNF1A gene encoding hepatocyte nuclear factor-1 alpha are associated with C-reactive protein.


[PMID 18728166OA-icon.png] Association studies of common variants in 10 hypogonadotropic hypogonadism genes with age at menarche.


[PMID 18852197OA-icon.png] Metabolic and cardiovascular traits: an abundance of recently identified common genetic variants.


[PMID 19197348OA-icon.png] Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.


[PMID 19401628OA-icon.png] Host genetics, steatosis and insulin resistance among African Americans and Caucasian Americans with hepatitis C virus genotype-1 infection.


[PMID 20031577OA-icon.png] Novel loci, including those related to Crohn disease, psoriasis, and inflammation, identified in a genome-wide association study of fibrinogen in 17 686 women: the Women's Genome Health Study.


[PMID 21647738OA-icon.png] Genome-wide association with C-reactive protein levels in CLHNS: evidence for the CRP and HNF1A loci and their interaction with exposure to a pathogenic environment.


[PMID 21931325] Gene polymorphisms of adiponectin and leptin receptor are associated with early onset of type 2 diabetes mellitus in the Taiwanese population.


GET Evidence
rs1892534
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.428571
summary