Rs1805388

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is asnp
is mentioned by
dbSNPrs1805388
hapmaprs1805388
hgdprs1805388
ensemblrs1805388
gopubmedrs1805388
scholarrs1805388
googlers1805388
pharmgkbrs1805388
hgvbaseg2prs1805388
medrefsnprs1805388
23andMers1805388
SNP Nexus

GeneLIG4
Chromosome13
Orientationminus
Position107661591
GenotypeEffect
rs1805388(C;C)*?
rs1805388(C;T)
rs1805388(T;T)*?


Genotypes Magnitude Summary
Rs1805388(A;A) 22 reduced risk of multiple myeloma
Rs1805388(C;T) 1.21.2


Neighborrs1805389
Distance18
? (C;C) (C;T) (T;T)


Venter snp
Source plos
Gene LIG4
allele A
frequency 0.167
sift AFFECT FUNCTION
HuRef 1103649330813
Disease Association Defects in LIG4 are the cause of LIG4 syndrome (MIM:606593). This disease is characterized by immunodeficiency and developmental and growth delay. Patients display unusual facial features, microcephaly, growth and/or developmental delay, pancytopenia, and various skin abnormalities.



[PMID 19408343] Lung cancer susceptibility and prognosis associated with polymorphisms in the nonhomologous end-joining pathway genes: a multiple genotype-phenotype study


[PMID 19604268] Association between total immunoglobulin E and antibody responses to naturally acquired Ascaris lumbricoides infection and polymorphisms of immune system-related LIG4, TNFSF13B and IRS2 genes

PharmGKBPA161615701
Name
AnnotationThis variant may be associated with risk of developing glioma.
GeneABHD13, LIG4
Featue
EvidencePubMed ID:18165945
Drugs
DiseasesGlioma
Curation LevelCurated