Rs1793004

From SNPedia

Jump to: navigation, search
is asnp
is mentioned by
dbSNPrs1793004
hapmaprs1793004
hgdprs1793004
ensemblrs1793004
gopubmedrs1793004
scholarrs1793004
googlers1793004
pharmgkbrs1793004
hgvbaseg2prs1793004
medrefsnprs1793004
23andMers1793004
SNP Nexus

GeneNELL1
Chromosome11
Orientationminus
Position20655504
GenotypeEffect
rs1793004(C;C)increased risk for Crohn's disease
rs1793004(C;G)?
rs1793004(G;G)0.89x decreased risk for Crohn's disease


Genotypes Magnitude Summary
Rs1793004(C;C) increased risk for Crohn's disease
Rs1793004(C;G) ?
Rs1793004(G;G) 0.89x decreased risk for Crohn's disease
rs1793004 is a SNP in the NELL1 gene that was found in a genome-wide association study to be associated with Crohn's disease.

In several European populations, the most common allele, rs1793004(C), was associated with increased risk for Crohn's disease. Conversely, the odds ratio (pooled over several populations) for the minor allele, rs1793004(G), was 0.89 (CI: 0.69-1.14, p=0.0037).[PMID 17684544]

? (C;C) (C;G) (G;G)
GWAS
SNP rs1793004
PubMedID [PMID 17684544]
Condition Irritable bowel syndrome
Gene NELL1
Risk Allele
pValue 3.00E-006
OR 1.3
95% CI 1.12-1.52


PharmGKBPA162356578
Name
AnnotationGWAS results: Systematic association mapping identifies NELL1 as a novel IBD disease gene (Initial Sample Size: 393 cases, 399 controls; Replication Sample Size: 2,920 cases, 1,961 controls, 1,248 trios). This variant is associated with Irritable bowel syndrome.
GeneNELL1
Featue
EvidencePubMed ID:17684544; Web Resource:http://www.genome.gov/gwastudies/
Drugs
DiseasesColonic Diseases, Functional
Curation LevelNon-Curated