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rs1540771

From SNPedia

Orientationminus
Stabilizedminus
Geno Mag Summary
(A;A) 0 common in complete genomics
Make rs1540771(A;G)
Make rs1540771(G;G)
ReferenceGRCh38 38.1/142
Chromosome6
Position466033
GeneLOC105374875
is asnp
is mentioned by
dbSNPrs1540771
dbSNP (classic)rs1540771
ClinGenrs1540771
ebirs1540771
HLIrs1540771
Exacrs1540771
Gnomadrs1540771
Varsomers1540771
LitVarrs1540771
Maprs1540771
PheGenIrs1540771
Biobankrs1540771
1000 genomesrs1540771
hgdprs1540771
ensemblrs1540771
geneviewrs1540771
scholarrs1540771
googlers1540771
pharmgkbrs1540771
gwascentralrs1540771
openSNPrs1540771
23andMers1540771
SNPshotrs1540771
SNPdbers1540771
MSV3drs1540771
GWAS Ctlgrs1540771
GMAF0.3489
Max Magnitude0
? (A;A) (A;G) (G;G) 28


plos the association between rs12203592 and hair color was independent of rs1540771, a SNP between the IRF4 and EXOC2 genes previously found to be associated with hair color.

GWAS
SNP rs1540771
PubMedID [PMID 17952075]
Condition Freckles
Gene SEC5L1,IRF4
Risk Allele A
pValue 4.00E-018
OR 1.4
95% CI 1.26-1.57


OMIM611724
DescSKIN/HAIR/EYE PIGMENTATION, VARIATION IN, 8; SHEP8
Variant
Relatedalso



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