rs1062202
From SNPedia
| Orientation | minus |
| Stabilized | minus |
| Make rs1062202(C;C) |
| Make rs1062202(C;T) |
| Make rs1062202(T;T) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 21 |
| Position | 17792325 |
| Gene | C21orf91, C21orf91-OT1 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs1062202 |
| dbSNP (classic) | rs1062202 |
| ClinGen | rs1062202 |
| ebi | rs1062202 |
| HLI | rs1062202 |
| Exac | rs1062202 |
| Gnomad | rs1062202 |
| Varsome | rs1062202 |
| LitVar | rs1062202 |
| Map | rs1062202 |
| PheGenI | rs1062202 |
| Biobank | rs1062202 |
| 1000 genomes | rs1062202 |
| hgdp | rs1062202 |
| ensembl | rs1062202 |
| geneview | rs1062202 |
| scholar | rs1062202 |
| rs1062202 | |
| pharmgkb | rs1062202 |
| gwascentral | rs1062202 |
| openSNP | rs1062202 |
| 23andMe | rs1062202 |
| SNPshot | rs1062202 |
| SNPdbe | rs1062202 |
| MSV3d | rs1062202 |
| GWAS Ctlg | rs1062202 |
| GMAF | 0.3733 |
| Max Magnitude | 0 |
| ? | (C;C) (C;T) (T;T) | 28 |
|---|---|---|
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[PMID 22039568
] http://jid.oxfordjournals.org/content/204/11/1654.long
This analysis revealed a strong association between the frequently affected phenotype and the C allele of SNP rs1062202 (?2 = 8.0, P = .0047), predicted to lie in the 3? UTR of C21orf91 (Figure 2, Table 1). Another SNP, rs10446073, which was approximately 1 kb upstream of the start site of transcription of C21orf91, also showed a moderate association (?2 = 3.57, P = .06) with the cold-sore phenotype.
