Rs1000113

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is asnp
is mentioned by
dbSNPrs1000113
hapmaprs1000113
hgdprs1000113
ensemblrs1000113
gopubmedrs1000113
scholarrs1000113
googlers1000113
pharmgkbrs1000113
hgvbaseg2prs1000113
medrefsnprs1000113
23andMers1000113
SNP Nexus

Chromosome5
Orientationplus
Position150220268
GenotypeEffect
rs1000113(T;T)1.9x risk of Crohn's disease
rs1000113(C;T)1.5x risk of Crohn's disease
rs1000113(C;C)normal


Genotypes Magnitude Summary
Rs1000113(C;C) 00 normal
Rs1000113(C;T) 1.5x risk of Crohn's disease
Rs1000113(T;T) 1.9x risk of Crohn's disease
rs1000113 has been reported in a large study to be associated with Crohn's disease.

The risk allele (oriented to the dbSNP entry) is (T); the odds ratio associated with heterozygotes is 1.54 (CI 1.31-1.82), and for homozygotes, 1.92 (CI 0.92-4.00). [PMID 17554300]

? (C;C) (C;T) (T;T)
Neighborrs4958847
Distance489
GWAS
SNP rs1000113
PubMedID [PMID 17554300]
Condition Crohn's disease
Gene IRGM
Risk Allele T
pValue 3.00E-007
OR 1.54
95% CI 1.31-1.82


PharmGKBPA162356635
Name
AnnotationGWAS Results: Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls (Initial Sample Size: 1,748 cases, 2,938 controls; Replication Sample Size: (see Parkes 2007); Risk Allele: rs1000113-T). This variant is associated with crohn's disease.
Gene-
Featue
EvidencePubMed ID:17554300; Web Resource:http://www.genome.gov/gwastudies/
Drugs
DiseasesCrohn Disease
Curation LevelNon-Curated