rs77542170
From SNPedia
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(C;C) | 5 | autosomal recessive familial adenomatous polyposis-2 (FAP2) |
(C;T) | 3 | Carrier of a colorectal polyposis mutation |
(T;T) | 0 | common in clinvar |
Reference | GRCh38 38.1/141 |
Chromosome | 1 |
Position | 45332088 |
Gene | MUTYH |
is a | snp |
is | mentioned by |
dbSNP | rs77542170 |
dbSNP (classic) | rs77542170 |
ClinGen | rs77542170 |
ebi | rs77542170 |
HLI | rs77542170 |
Exac | rs77542170 |
Gnomad | rs77542170 |
Varsome | rs77542170 |
LitVar | rs77542170 |
Map | rs77542170 |
PheGenI | rs77542170 |
Biobank | rs77542170 |
1000 genomes | rs77542170 |
hgdp | rs77542170 |
ensembl | rs77542170 |
geneview | rs77542170 |
scholar | rs77542170 |
rs77542170 | |
pharmgkb | rs77542170 |
gwascentral | rs77542170 |
openSNP | rs77542170 |
23andMe | rs77542170 |
SNPshot | rs77542170 |
SNPdbe | rs77542170 |
MSV3d | rs77542170 |
GWAS Ctlg | rs77542170 |
GMAF | 0.002296 |
Max Magnitude | 5 |
rs77542170, also known as both c.925-2A>G and c.934-2A>G, represents a rare variant in the MUTYH gene on chromosome 1.
Inherited recessively, the minor allele is considered in ClinVar (and BabySeq) as a pathogenic mutation for a cancer-predisposing syndrome, autosomal recessive familial adenomatous polyposis-2 (FAP2). Affected individuals have a significantly higher risk of developing colorectal cancer.
ClinVar | |
---|---|
Risk | Rs77542170(C;C) |
Alt | Rs77542170(C;C) |
Reference | Rs77542170(T;T) |
Significance | Other |
Disease | MYH-associated polyposis not specified Hereditary cancer-predisposing syndrome not provided |
Variation | info |
Gene | MUTYH |
CLNDBN | MYH-associated polyposis not specified Hereditary cancer-predisposing syndrome not provided |
Reversed | 0 |
HGVS | NC_000001.10:g.45797760T>C |
CLNSRC | Ambry Genetics ClinVar |
CLNACC | RCV000034683.8, RCV000122431.1, RCV000129053.8, RCV000212712.3, |