| Geno
|
Mag
|
Summary
|
| (G;G)
|
0
|
normal
|
| (G;T)
|
2.2
|
3x higher risk for PD
|
| (T;T)
|
2.5
|
3x higher risk for PD
|
rs283413, also known as c.232G>T, p.Gly78Ter, G78stop and Gly78X, encodes a rare variant of the ADH1C gene that leads to a truncated alcohol dehydrogenase protein. These types of proteins are involved in detoxification and may be linked to neurodegenerative diseases. The rs283413(G) allele is the more common, encoding the amino acid glycine (Gly); the quite rare rs283413(T) allele encodes the variant stop codon (X).
Originally identified in three Swedish patients with Parkinson's disease (PD), a study of ~1000 PD patients vs. ~1000 controls indicated an odds ratio for the risk allele of 3.25 (CI:1.31-8.05). [This risk is effectively for heterozygotes, since the risk allele is so rare that no homozygotes for it were observed.] In a study of 40 index cases, 10% were found to harbor the rs283413(T) risk allele. [PMID 15642852]
On its own, this SNP is also said to explain 9.0% of the variability in the rate at which alcohol is metabolized, based on a study of 250 Spaniards.[PMID 20101753] More significantly (in a statistical sense), this study concluded that combinations of this SNP and others were shown to affect alcohol metabolism; most of these combinations are represented by the gs211 genoset. Note that the effects of alcohol are higher in individuals who break down (basically, detoxify) ethanol more slowly.
| OMIM | 103730 |
| Desc | ALCOHOL DEHYDROGENASE 1C, GAMMA POLYPEPTIDE; ADH3 |
| Variant | |
| Related | also |
[PMID 17273965
] Evidence of positive selection on a class I ADH locus.
[PMID 18852891] Distribution and effects of nonsense polymorphisms in human genes.
] Evidence of positive selection on a class I ADH locus.
