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rs1672879

From SNPedia

Orientationminus
Stabilizedminus
Make rs1672879(A;A)
Make rs1672879(A;C)
Make rs1672879(C;C)
ReferenceGRCh38 38.1/142
Chromosome12
Position124796556
GeneSCARB1
is asnp
is mentioned by
dbSNPrs1672879
dbSNP (classic)rs1672879
ClinGenrs1672879
ebirs1672879
HLIrs1672879
Exacrs1672879
Gnomadrs1672879
Varsomers1672879
LitVarrs1672879
Maprs1672879
PheGenIrs1672879
Biobankrs1672879
1000 genomesrs1672879
hgdprs1672879
ensemblrs1672879
geneviewrs1672879
scholarrs1672879
googlers1672879
pharmgkbrs1672879
gwascentralrs1672879
openSNPrs1672879
23andMers1672879
SNPshotrs1672879
SNPdbers1672879
MSV3drs1672879
GWAS Ctlgrs1672879
Max Magnitude0
? (A;A) (A;C) (C;C) 28


rs1672879 is a SNP in the scavenger receptor class B, member 1 SCARB1 gene which encodes a cholesterol membrane transporter.

A study including African (n = 914), Hispanic (n = 464), and European (n = 1203) American postmenopausal women from the Women’s Health Initiative assessed SNP associations and serum concentrations of lycopene. In the resulting meta-analysis, rs1672879(C) allele, as oriented in dbSNP, was associated with lycopene concentrations (p < 2.68 × 10e−9), with each C allele resulting in a 12% decrease in lycopene concentrations for African Americans, a 20% decrease for Hispanic Americans, and a 9% decrease for European Americans. 10.3945/​jn.114.202150


[PMID 25644336OA-icon.png] Genetic variation predicts serum lycopene concentrations in a multiethnic population of postmenopausal women