rs80358550
From SNPedia
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(A;A) | 0 | common in clinvar |
(A;T) | 6 | BRCA2 variant considered pathogenic for breast cancer |
Make rs80358550(A;G) |
Make rs80358550(G;G) |
Reference | GRCh38 38.1/141 |
Chromosome | 13 |
Position | 32337428 |
Gene | BRCA2 |
is a | snp |
is | mentioned by |
dbSNP | rs80358550 |
dbSNP (classic) | rs80358550 |
ClinGen | rs80358550 |
ebi | rs80358550 |
HLI | rs80358550 |
Exac | rs80358550 |
Gnomad | rs80358550 |
Varsome | rs80358550 |
LitVar | rs80358550 |
Map | rs80358550 |
PheGenI | rs80358550 |
Biobank | rs80358550 |
1000 genomes | rs80358550 |
hgdp | rs80358550 |
ensembl | rs80358550 |
geneview | rs80358550 |
scholar | rs80358550 |
rs80358550 | |
pharmgkb | rs80358550 |
gwascentral | rs80358550 |
openSNP | rs80358550 |
23andMe | rs80358550 |
SNPshot | rs80358550 |
SNPdbe | rs80358550 |
MSV3d | rs80358550 |
GWAS Ctlg | rs80358550 |
Max Magnitude | 6 |
aka c.3073A>T (p.Lys1025Ter) but note also presence of c.3073A>G (p.Lys1025Glu)
In ClinVar, c.3073A>T is pathogenic for breast cancer by expert consensus; however, c.3073A>G is annotated as either benign or of uncertain significance.
ClinVar | |
---|---|
Risk | rs80358550(G;G) rs80358550(T;T) |
Alt | rs80358550(G;G) rs80358550(T;T) |
Reference | Rs80358550(A;A) |
Significance | Other |
Disease | not specified Breast-ovarian cancer Hereditary cancer-predisposing syndrome Hereditary breast and ovarian cancer syndrome |
Variation | info |
Gene | BRCA2 |
CLNDBN | not specified Breast-ovarian cancer, familial 2 Hereditary cancer-predisposing syndrome Hereditary breast and ovarian cancer syndrome |
Reversed | 0 |
HGVS | NC_000013.10:g.32911565A>G; NC_000013.10:g.32911565A>T |
CLNSRC | Ambry Genetics ClinVar |
CLNACC | RCV000044112.6, RCV000077290.4, RCV000131460.3, RCV000195367.3, RCV000031399.4, |