Have questions? Visit https://www.reddit.com/r/SNPedia

rs7787082

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(A;A)
(A;G)
(G;G) 0
ReferenceGRCh38 38.1/141
Chromosome7
Position87527735
GeneABCB1
is asnp
is mentioned by
dbSNPrs7787082
dbSNP (classic)rs7787082
ClinGenrs7787082
ebirs7787082
HLIrs7787082
Exacrs7787082
Gnomadrs7787082
Varsomers7787082
LitVarrs7787082
Maprs7787082
PheGenIrs7787082
Biobankrs7787082
1000 genomesrs7787082
hgdprs7787082
ensemblrs7787082
geneviewrs7787082
scholarrs7787082
googlers7787082
pharmgkbrs7787082
gwascentralrs7787082
openSNPrs7787082
23andMers7787082
23andMe allrs7787082
SNPshotrs7787082
SNPdbers7787082
MSV3drs7787082
GWAS Ctlgrs7787082
GMAF0.3678
Max Magnitude0
? (A;A) (A;G) (G;G) 28


rs7787082 is a SNP in the ABCB1 gene (also known as the MDR1 gene), which encodes a protein that transports certain molecules across the blood-brain barrier. SNPs in ABCB1 may thus influence the intracerebral concentrations of certain drugs and their efficacy or potential for adverse side effects. However, the link between the increased brain concentrations of antidepressants and a clinically significant response is unconfirmed. In clinic, even the lower concentrations of drugs may achieve sufficient antidepressant effect, and the dose of the drug can be adjusted upwards until the patient responds. According to a recent review [PMID 27918249], ten studies reported that ABCB1 SNPs have clinical effect in depression and eight that they do not.


rs7787082 is one of 9 SNPs found within a tight linkage block (r2 >= 0.8 ) such that the minor allele at any one of them predicts (with ~80%+ accuracy) that the other SNPs will also be the minor allele. The list of the 9 SNPs is shown below.10.1016/j.neuron.2007.11.017


When treated for depression with citalopram, paroxetine, amitriptyline, or venlafaxine (substrates of the protein encoded by ABCB1), a highly statistically significant association between the overall genetic variability of these SNPs and the remission was reported by Uhr et al in a study of ~400 German inpatients.10.1016/j.neuron.2007.11.017 However, the result for rs7787082 has to be treated with caution. A well-run, double-blind study of ABCB1 substrate citalopram in depression (STAR-D study) and a following meta-analysis [PMID 25847751] failed to replicate several Uhr et al. results for other ABCB1 SNPs in this block.

The 9 SNPs in the linkage block identified are 10.1016/j.neuron.2007.11.017:



[PMID 22722500] Association study of 27 annotated genes for clozapine pharmacogenetics: validation of preexisting studies and identification of a new candidate gene, ABCB1, for treatment response.


[PMID 26988277OA-icon.png] Genetic Association of Curative and Adverse Reactions to Tyrosine Kinase Inhibitors in Chinese advanced Non-Small Cell Lung Cancer patients.