rs4227
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (G;G) | 0 | common in clinvar |
| Make rs4227(G;T) |
| Make rs4227(T;T) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 17 |
| Position | 7587859 |
| Gene | MPDU1, SOX15 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs4227 |
| dbSNP (classic) | rs4227 |
| ClinGen | rs4227 |
| ebi | rs4227 |
| HLI | rs4227 |
| Exac | rs4227 |
| Gnomad | rs4227 |
| Varsome | rs4227 |
| LitVar | rs4227 |
| Map | rs4227 |
| PheGenI | rs4227 |
| Biobank | rs4227 |
| 1000 genomes | rs4227 |
| hgdp | rs4227 |
| ensembl | rs4227 |
| geneview | rs4227 |
| scholar | rs4227 |
| rs4227 | |
| pharmgkb | rs4227 |
| gwascentral | rs4227 |
| openSNP | rs4227 |
| 23andMe | rs4227 |
| SNPshot | rs4227 |
| SNPdbe | rs4227 |
| MSV3d | rs4227 |
| GWAS Ctlg | rs4227 |
| GMAF | 0.3099 |
| Max Magnitude | 0 |
| ? | (G;G) (G;T) (T;T) | 28 |
|---|---|---|
|
| ||
| GWAS snp | |
|---|---|
| PMID | [PMID 22197929] |
| Trait | |
| Title | A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy. |
| Risk Allele | G |
| P-val | 4E-10 |
| Odds Ratio | 1.2300 None |
[PMID 12466288
] Haplotype and linkage disequilibrium architecture for human cancer-associated genes.
| ClinVar | |
|---|---|
| Risk | rs4227(T;T) |
| Alt | rs4227(T;T) |
| Reference | Rs4227(G;G) |
| Significance | Non-pathogenic |
| Disease | Congenital disorder of glycosylation |
| Variation | info |
| Gene | SOX15 MPDU1 |
| CLNDBN | Congenital disorder of glycosylation |
| Reversed | 0 |
| HGVS | NC_000017.10:g.7491177G>T |
| CLNSRC | |
| CLNACC | RCV000299242.1, |
