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rs34210653

From SNPedia

Orientationminus
Stabilizedminus
Geno Mag Summary
(C;C) 0 normal risk
(C;T) 1.6x increased risk for heart disease
(T;T) 2 Reduced risk for nasal polyps and chronic sinusitis
ReferenceGRCh38 38.1/142
Chromosome17
Position4632019
GeneALOX15
is asnp
is mentioned by
dbSNPrs34210653
dbSNP (classic)rs34210653
ClinGenrs34210653
ebirs34210653
HLIrs34210653
Exacrs34210653
Gnomadrs34210653
Varsomers34210653
LitVarrs34210653
Maprs34210653
PheGenIrs34210653
Biobankrs34210653
1000 genomesrs34210653
hgdprs34210653
ensemblrs34210653
geneviewrs34210653
scholarrs34210653
googlers34210653
pharmgkbrs34210653
gwascentralrs34210653
openSNPrs34210653
23andMers34210653
SNPshotrs34210653
SNPdbers34210653
MSV3drs34210653
GWAS Ctlgrs34210653
GMAF0.01469
Max Magnitude2

rs34210653 is a SNP in the ALOX15 gene, either encoding a threonine or a methionine at position 560 of the corresponding protein. This SNP is also known as T560M; the more common (C) allele encodes the threonine, and the rarer (T) allele encodes the methionine.

In mice, this protein appears to promote atherosclerosis, and mice completely lacking the entire gene are free of atherosclerosis. In contrast, rs34210653(T;T) humans, who effectively have a non-functioning variant, do not show a statistically significant decreased risk for coronary artery disease. And rs34210653(C;T) heterozygotes an increased risk of heart disease (adjusted odds ratio 1.62, p=0.02).[PMID 17959182OA-icon.png]

In 2019, a study of ~10,000 patients concluded that rs34210653(T) confers significant protection against nasal polyps (OR 0.32, CI: 0.26-0.39, p = 8.0 × 10e−27) and chronic rhinosinusitis (OR 0.64, CI: 0.55-75, p = 1.1 × 10e−8).[PMID 30643255]


[PMID 19046748OA-icon.png] Variation in eicosanoid genes, non-fatal myocardial infarction and ischemic stroke.



[PMID 23906684] Genetic associations with coronary heart disease: Meta-analyses of 12 candidate genetic variants