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rs3131379

From SNPedia

Orientationminus
Stabilizedminus
Geno Mag Summary
(C;C) 0 common on affy axiom data
Make rs3131379(C;T)
Make rs3131379(T;T)
ReferenceGRCh38 38.1/141
Chromosome6
Position31753256
GeneMSH5, MSH5-SAPCD1
is asnp
is mentioned by
dbSNPrs3131379
dbSNP (classic)rs3131379
ClinGenrs3131379
ebirs3131379
HLIrs3131379
Exacrs3131379
Gnomadrs3131379
Varsomers3131379
LitVarrs3131379
Maprs3131379
PheGenIrs3131379
Biobankrs3131379
1000 genomesrs3131379
hgdprs3131379
ensemblrs3131379
geneviewrs3131379
scholarrs3131379
googlers3131379
pharmgkbrs3131379
gwascentralrs3131379
openSNPrs3131379
23andMers3131379
SNPshotrs3131379
SNPdbers3131379
MSV3drs3131379
GWAS Ctlgrs3131379
GMAF0.04408
Max Magnitude0
? (C;C) (C;T) (T;T) 28


GWAS snp
PMID [PMID 18204446OA-icon.png]
Trait Systemic lupus erythematosus in women
Title Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci
Risk Allele A
P-val 2E-52
Odds Ratio 2.36 [2.11-2.64]
OMIM612593
DescLUNG CANCER SUSCEPTIBILITY 4; LNCR4
Variant
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[PMID 21952918OA-icon.png] Evidence for gene-gene epistatic interactions among susceptibility loci for systemic lupus erythematosus.



[PMID 25187487OA-icon.png] Susceptibility loci for lung cancer are associated with mRNA levels of nearby genes in the lung