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rs2228622

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(G;G) 0 common in clinvar
Make rs2228622(A;A)
Make rs2228622(A;G)
ReferenceGRCh38 38.1/141
Chromosome9
Position4564432
GeneSLC1A1, SPATA6L
is asnp
is mentioned by
dbSNPrs2228622
dbSNP (old)rs2228622
ClinGenrs2228622
ebirs2228622
HLIrs2228622
Exacrs2228622
Gnomadrs2228622
Varsomers2228622
Maprs2228622
PheGenIrs2228622
Biobankrs2228622
1000 genomesrs2228622
hgdprs2228622
ensemblrs2228622
gopubmedrs2228622
geneviewrs2228622
scholarrs2228622
googlers2228622
pharmgkbrs2228622
gwascentralrs2228622
openSNPrs2228622
23andMers2228622
23andMe allrs2228622
SNP Nexus

SNPshotrs2228622
SNPdbers2228622
MSV3drs2228622
GWAS Ctlgrs2228622
GMAF0.3108
Max Magnitude0
? (A;A) (A;G) (G;G) 28
[PMID 19884611] Association of the glutamate transporter gene SLC1A1 with atypical antipsychotics-induced obsessive-compulsive symptoms



[PMID 21990008] Interaction between genetic variants of DLGAP3 and SLC1A1 affecting the risk of atypical antipsychotics-induced obsessive-compulsive symptoms.


[PMID 17894418] Association of the SLC1A1 glutamate transporter gene and obsessive-compulsive disorder.


[PMID 21124337] Evidence for epistatic interactions in antiepileptic drug resistance.


[PMID 22531293] Polymorphisms in the glutamate transporter gene SLC1A1 and obsessive-compulsive symptoms induced by second-generation antipsychotic agents.


GET Evidence
rs2228622
aa_change
aa_change_short
impact pharmacogenetic
qualified_impact Insufficiently evaluated pharmacogenetic
overall_frequency 0.351459
summary



[PMID 23564280] Association between SLC1A1 gene and early-onset OCD in the Han Chinese population: a case-control study.


[PMID 23660601] Influence of polymorphisms in genes SLC1A1, GRIN2B, and GRIK2 on clozapine-induced obsessive-compulsive symptoms.


[PMID 23411042] Association of the candidate gene SLC1A1 and obsessive-compulsive disorder in Han Chinese population


ClinVar
Risk rs2228622(A;A)
Alt rs2228622(A;A)
Reference Rs2228622(G;G)
Significance Non-pathogenic
Disease Dicarboxylic aminoaciduria
Variation info
Gene SLC1A1 SPATA6L
CLNDBN Dicarboxylic aminoaciduria
Reversed 0
HGVS NC_000009.11:g.4564432G>A
CLNSRC
CLNACC RCV000325722.1,