rs17279437

Orientation

plus

Stabilized

plus

Geno	Mag	Summary
(G;G)	0	common on affy axiom data

Make rs17279437(A;A)

Make rs17279437(A;G)

Reference

GRCh38 38.1/141

Chromosome

3

Position

45772602

Gene

SLC6A20

is a	snp
is	mentioned by
dbSNP	rs17279437
dbSNP (classic)	rs17279437
ClinGen	rs17279437
ebi	rs17279437
HLI	rs17279437
Exac	rs17279437
Gnomad	rs17279437
Varsome	rs17279437
LitVar	rs17279437
Map	rs17279437
PheGenI	rs17279437
Biobank	rs17279437
1000 genomes	rs17279437
hgdp	rs17279437
ensembl	rs17279437
geneview	rs17279437
scholar	rs17279437
google	rs17279437
pharmgkb	rs17279437
gwascentral	rs17279437
openSNP	rs17279437
23andMe	rs17279437
SNPshot	rs17279437
SNPdbe	rs17279437
MSV3d	rs17279437
GWAS Ctlg	rs17279437

GMAF

0.04637

Max Magnitude

0

?	(A;A) (A;G) (G;G)	28

OMIM	605616
Desc
Variant	0001
Related	also

GWAS snp
PMID	[PMID 21572414]
Trait
Title	A genome-wide association study of metabolic traits in human urine.
Risk Allele	A
P-val	3E-19
Odds Ratio	None None

ClinVar
Risk	rs17279437(A;A)
Alt	rs17279437(A;A)
Reference	Rs17279437(G;G)
Significance	Other
Disease	Hyperglycinuria Iminoglycinuria
Variation	info
Gene	SLC6A20
CLNDBN	Hyperglycinuria Iminoglycinuria, digenic
Reversed	0
HGVS	NC_000003.11:g.45814094G>A
CLNSRC	OMIM Allelic Variant UniProtKB (protein)
CLNACC	RCV000005117.3, RCV000005118.2,

GWAS snp
PMID	[PMID 24816252]
Trait	Blood metabolite levels
Title	An atlas of genetic influences on human blood metabolites.
Risk Allele	A
P-val	1E-20
Odds Ratio	.06 [0.047-0.071] unit increase