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rs1417066

From SNPedia

Orientationminus
Stabilizedminus
Geno Mag Summary
(C;C) 1 risk of osteoarthritis
(C;T) 1 slightly increased risk of osteoarthritis
Make rs1417066(T;T)
ReferenceGRCh38 38.1/141
Chromosome1
Position219500486
GeneLOC102723886, LOC107985272
is asnp
is mentioned by
dbSNPrs1417066
dbSNP (old)rs1417066
ClinGenrs1417066
ebirs1417066
HLIrs1417066
Exacrs1417066
Varsomers1417066
Maprs1417066
PheGenIrs1417066
Biobankrs1417066
1000 genomesrs1417066
hgdprs1417066
ensemblrs1417066
gopubmedrs1417066
geneviewrs1417066
scholarrs1417066
googlers1417066
pharmgkbrs1417066
gwascentralrs1417066
openSNPrs1417066
23andMers1417066
23andMe allrs1417066
SNP Nexus

SNPshotrs1417066
SNPdbers1417066
MSV3drs1417066
GWAS Ctlgrs1417066
GMAF0.371
Max Magnitude1
? (C;C) (C;T) (T;T) 28
[PMID 22763110OA-icon.png] A 2012 large study of osteoarthritis was replicated in 7473 cases and 42,938 controls. The meta-analysis (prior to replication) found approximately 1.12x risk of osteoarthritis for minor allele of rs1417066 (as shown in table ST4, appendix, p. 76), but its significance was p=3·90 E-06 and it did not reach the minimum for genome-wide significance at (p=5·0×10−8).
GWAS snp
PMID [PMID 22763110OA-icon.png]
Trait Osteoarthritis
Title Identification of new susceptibility loci for osteoarthritis (arcOGEN): a genome-wide association study.
Risk Allele G
P-val 1E-6
Odds Ratio 1.07 [1.04-1.10]