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rs11177

From SNPedia

Orientationminus
Stabilizedminus
Make rs11177(C;C)
Make rs11177(C;T)
Make rs11177(T;T)
ReferenceGRCh38 38.1/141
Chromosome3
Position52687289
GeneGNL3, PBRM1, SNORD136, SNORD19
is asnp
is mentioned by
dbSNPrs11177
dbSNP (classic)rs11177
ClinGenrs11177
ebirs11177
HLIrs11177
Exacrs11177
Gnomadrs11177
Varsomers11177
LitVarrs11177
Maprs11177
PheGenIrs11177
Biobankrs11177
1000 genomesrs11177
hgdprs11177
ensemblrs11177
geneviewrs11177
scholarrs11177
googlers11177
pharmgkbrs11177
gwascentralrs11177
openSNPrs11177
23andMers11177
SNPshotrs11177
SNPdbers11177
MSV3drs11177
GWAS Ctlgrs11177
GMAF0.388
Max Magnitude0
? (C;C) (C;T) (T;T) 28


[PMID 22763110OA-icon.png] Identification of new susceptibility loci for osteoarthritis (arcOGEN): a genome-wide association study. Published 2012. Found that two SNPs had significance "in perfect linkage disequilibrium (LD) with each other: rs11177 (allele A; figure A), a missense polymorphism within exon three of GNL3, coding for nucleostemin, and rs6976 (allele T; table 2), situated in the 3′ untranslated region (UTR) of the GLT8D1 gene." The OD for rs11177 was 1.09 (p=5·13×10−09) and the OD for rs6976 was 1.09 (p=6·56×10−09).

[PMID 19416921OA-icon.png] Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry. Published 2009. Found that "The most strongly associated nonsynonymous SNP rs1042779 (OR = 1.19, P = 1.8 × 10−7) is in the ITIH1 gene on chromosome 3, with other strongly associated nonsynonymous SNPs in GNL3, NEK4, and ITIH3." In particular, "Four additional nonsynonymous SNPs in this region had P < 10−5: rs2289247 (Val367Met) and rs11177 Arg27Gln in GNL3 (guanine nucleotide binding like-3), rs1029871 (Pro225Ala) in NEK4, and rs3617 (Gln315Lys) in ITIH3."


[PMID 29942097OA-icon.png] Common variants in the GNL3 contribute to the increasing risk of knee osteoarthritis in Han Chinese population.