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rs10462020

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(T;T) 0 common/normal
Make rs10462020(G;G)
Make rs10462020(G;T)
ReferenceGRCh38 38.1/141
Chromosome1
Position7820623
GenePER3
is asnp
is mentioned by
dbSNPrs10462020
dbSNP (old)rs10462020
ClinGenrs10462020
ebirs10462020
HLIrs10462020
Exacrs10462020
Gnomadrs10462020
Varsomers10462020
Maprs10462020
PheGenIrs10462020
Biobankrs10462020
1000 genomesrs10462020
hgdprs10462020
ensemblrs10462020
gopubmedrs10462020
geneviewrs10462020
scholarrs10462020
googlers10462020
pharmgkbrs10462020
gwascentralrs10462020
openSNPrs10462020
23andMers10462020
23andMe allrs10462020
SNP Nexus

SNPshotrs10462020
SNPdbers10462020
MSV3drs10462020
GWAS Ctlgrs10462020
GMAF0.1185
Max Magnitude0

A 2001 study reports that a haplotype consisting of rs10462020 & rs10462021 was significantly associated with delayed phase sleep syndrome (DSPS) in our study population (Bonferroni’s corrected P = 0.037; OR 7.79; CI: 1.59–38.3).[PMID 11306557OA-icon.png]

? (G;G) (G;T) (T;T) 28
[PMID 21647700OA-icon.png] Genome-wide association and meta-analysis in populations from Starr County, Texas, and Mexico City identify type 2 diabetes susceptibility loci and enrichment for expression quantitative trait loci in top signals


[PMID 22517501] Rotating night shift work and polymorphism of genes important for the regulation of circadian rhythm

[PMID 19166596OA-icon.png] Circadian polymorphisms associated with affective disorders.

[PMID 20174623OA-icon.png] Systematic analysis of circadian genes in a population-based sample reveals association of TIMELESS with depression and sleep disturbance.


GET Evidence
PER3-V639G
aa_change Val639Gly
aa_change_short V639G
impact not reviewed
qualified_impact Insufficiently evaluated not reviewed
overall_frequency 0.159323
summary



[PMID 26406960] A PER3 polymorphism is associated with better overall survival in diffuse large B-cell lymphoma in Mexican population