Genoset

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A genoset refers to a defined set of genotypes; we have coined the term to represent the combination of alleles at 2 or more loci, especially when they are not contiguous along a chromosome. Typically, these are then related to a medical (or ancestral) consequence that arises only when a particular combination of SNPs is inherited.

Promethease understands this criteria syntax.

More information about genosets can be found in the related SNPedia blog post. Note that genosets themselves are boolean, not quantitative; each genoset is either true (present) or false (absent) in an individual, based on the genoset's criteria, in the same way that a genotype (or allele) is either present or absent. Note that if a DNA microarray platform lacks a given SNP, genosets that require it (that SNP) will not return a result during a Promethease evaluation.

Most Significant

  Repute Magnitude Summary Modification dateThis property is a special property in this wiki.
Gs149 10 testing for orientation issues 8 May 2009 03:43:00
Gs216 Bad 6 2 copies of the APO-ε4 allele 1 March 2014 15:49:08
Gs228 6 sickle cell affected 25 October 2012 02:21:38
Gs267 6 APOE1/APOE1 11 October 2013 05:15:46
Gs121 5 DR3/4-DQ8 individual at high risk for type-1 diabetes 21 October 2011 06:04:16
Gs261 5 Help us fix a bug in SNPedia 24 November 2013 15:09:52
Gs254 Bad 4.1 Pseudocholinesterase Deficiency 25 October 2012 02:24:20
Gs268 Good 4 APOE E2/E2 6 December 2013 17:34:48
Gs251 Bad 4 Beta Thalassemia Carrier 4 July 2012 21:57:23
Gs145 4 Female 24 March 2014 20:03:48
… further results


Most Recently Active

  Repute Magnitude Summary Modification dateThis property is a special property in this wiki.
Gs286 Bad Possibility of progesterone receptor gene haplotype with 1.98x endometrial cancer risk. 18 April 2014 13:53:06
Gs287 Bad 3 Progesterone receptor gene PROGINS haplotype 18 April 2014 13:52:21
Gs290 2 You might have two short form 5-HTTLPR. 15 April 2014 20:28:20
Gs289 2 You have one short form 5-HTTLPR. 15 April 2014 20:27:00
Gs288 2 You have two long form 5-HTTLPR. 15 April 2014 20:26:27
Gs280 2.2 Light hair color for europeans 1 April 2014 04:27:27
Gs237 3.1 blue eyes are much more likely 31 March 2014 20:34:07
Gs260 2.5 Blue eyes 24 March 2014 20:11:41
Gs145 4 Female 24 March 2014 20:03:48
Gs266 2.5 Data Quality Warning 24 March 2014 13:38:27
… further results


You can create a new genoset by clicking that link and filling in the form. But you'll still need to populate the criteria syntax.