rs6596189
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (T;T) | 2 |
| Make rs6596189(C;C) |
| Make rs6596189(C;T) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 5 |
| Position | 135032479 |
| Gene | C5orf66, PITX1 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs6596189 |
| dbSNP (classic) | rs6596189 |
| ClinGen | rs6596189 |
| ebi | rs6596189 |
| HLI | rs6596189 |
| Exac | rs6596189 |
| Gnomad | rs6596189 |
| Varsome | rs6596189 |
| LitVar | rs6596189 |
| Map | rs6596189 |
| PheGenI | rs6596189 |
| Biobank | rs6596189 |
| 1000 genomes | rs6596189 |
| hgdp | rs6596189 |
| ensembl | rs6596189 |
| geneview | rs6596189 |
| scholar | rs6596189 |
| rs6596189 | |
| pharmgkb | rs6596189 |
| gwascentral | rs6596189 |
| openSNP | rs6596189 |
| 23andMe | rs6596189 |
| SNPshot | rs6596189 |
| SNPdbe | rs6596189 |
| MSV3d | rs6596189 |
| GWAS Ctlg | rs6596189 |
| GMAF | 0.1607 |
| Max Magnitude | 2 |
| ? | (C;C) (C;T) (T;T) | 28 |
|---|---|---|
|
| ||
[PMID 18053270
] Individuals homozygous or heterozygous for the rs11959298(A)-rs6596189(C) haplotype risk allele were 2.54 and 1.59 fold more likely to have autism, respectively, compared to rs11959298(G)-rs6596189(T) carriers.
Note/caveat emptor: ~90% of the world's population carries what the authors from this for-profit genetic testing company call the "risk haplotype", yet the frequency of autism is less than 1% (perhaps 1 in 150).
