rs63750217
From SNPedia
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(A;A) | 6 | Lynch syndrome; hereditary nonpolyposis colorectal cancer (HNPCC2) |
(A;G) | 5 | Lynch syndrome; hereditary nonpolyposis colorectal cancer (HNPCC2) |
(C;G) | 6 | Lynch syndrome |
(G;G) | 0 | common in clinvar |
Reference | GRCh38 38.1/141 |
Chromosome | 3 |
Position | 37048955 |
Gene | MLH1 |
is a | snp |
is | mentioned by |
dbSNP | rs63750217 |
dbSNP (classic) | rs63750217 |
ClinGen | rs63750217 |
ebi | rs63750217 |
HLI | rs63750217 |
Exac | rs63750217 |
Gnomad | rs63750217 |
Varsome | rs63750217 |
LitVar | rs63750217 |
Map | rs63750217 |
PheGenI | rs63750217 |
Biobank | rs63750217 |
1000 genomes | rs63750217 |
hgdp | rs63750217 |
ensembl | rs63750217 |
geneview | rs63750217 |
scholar | rs63750217 |
rs63750217 | |
pharmgkb | rs63750217 |
gwascentral | rs63750217 |
openSNP | rs63750217 |
23andMe | rs63750217 |
SNPshot | rs63750217 |
SNPdbe | rs63750217 |
MSV3d | rs63750217 |
GWAS Ctlg | rs63750217 |
Max Magnitude | 6 |
rs63750217 is a SNP in the MLH1 gene on chromosome 3, associated with Lynch syndrome (HNPCC).[PMID 16451135]
This variant meets the criteria published in 2013 by the ACMG regarding incidental findings in exome or genome sequencing, as a variant that they do recommend informing a patient about.[PMID 23788249]
See also OMIM 120436.0022
ClinVar | |
---|---|
Risk | Rs63750217(A;A) rs63750217(C;C) |
Alt | Rs63750217(A;A) rs63750217(C;C) |
Reference | Rs63750217(G;G) |
Significance | Other |
Disease | Lynch syndrome II Lynch syndrome not specified Hereditary cancer-predisposing syndrome |
Variation | info |
Gene | MLH1 |
CLNDBN | Lynch syndrome II Lynch syndrome not specified Hereditary cancer-predisposing syndrome |
Reversed | 0 |
HGVS | NC_000003.11:g.37090446G>A; NC_000003.11:g.37090446G>C |
CLNSRC | OMIM Allelic Variant UniProtKB (protein) |
CLNACC | RCV000018632.23, RCV000075495.3, RCV000202172.1, RCV000213700.1, RCV000221566.1, |