rs6139030
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (T;T) | 0 | common on affy axiom data |
| Make rs6139030(C;C) |
| Make rs6139030(C;T) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 20 |
| Position | 3207087 |
| Gene | ITPA |
| is a | snp |
| is | mentioned by |
| dbSNP | rs6139030 |
| dbSNP (classic) | rs6139030 |
| ClinGen | rs6139030 |
| ebi | rs6139030 |
| HLI | rs6139030 |
| Exac | rs6139030 |
| Gnomad | rs6139030 |
| Varsome | rs6139030 |
| LitVar | rs6139030 |
| Map | rs6139030 |
| PheGenI | rs6139030 |
| Biobank | rs6139030 |
| 1000 genomes | rs6139030 |
| hgdp | rs6139030 |
| ensembl | rs6139030 |
| geneview | rs6139030 |
| scholar | rs6139030 |
| rs6139030 | |
| pharmgkb | rs6139030 |
| gwascentral | rs6139030 |
| openSNP | rs6139030 |
| 23andMe | rs6139030 |
| SNPshot | rs6139030 |
| SNPdbe | rs6139030 |
| MSV3d | rs6139030 |
| GWAS Ctlg | rs6139030 |
| GMAF | 0.09826 |
| Max Magnitude | 0 |
Carriers of the C allele at rs6139030 have a higher risk of developing thrombocytopenia when treated with interferon. [PMID 21659334]
| ? | (C;C) (C;T) (T;T) | 28 |
|---|---|---|
|
| ||
| GWAS snp | |
|---|---|
| PMID | [PMID 21659334] |
| Trait | |
| Title | Genome-wide association study identified ITPA/DDRGK1 variants reflecting thrombocytopenia in pegylated interferon and ribavirin therapy for chronic hepatitis C. |
| Risk Allele | C |
| P-val | 1E-15 |
| Odds Ratio | 3.9000 [2.80-5.50] |
