rs4409764
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (G;G) | 0 | normal risk of Crohn's disease |
| (G;T) | 1.32x increased risk of Crohn's disease in Koreans | |
| (T;T) | >1.32x increased risk of Crohn's disease in Koreans |
| Reference | GRCh38 38.1/142 |
| Chromosome | 10 |
| Position | 99524480 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs4409764 |
| dbSNP (classic) | rs4409764 |
| ClinGen | rs4409764 |
| ebi | rs4409764 |
| HLI | rs4409764 |
| Exac | rs4409764 |
| Gnomad | rs4409764 |
| Varsome | rs4409764 |
| LitVar | rs4409764 |
| Map | rs4409764 |
| PheGenI | rs4409764 |
| Biobank | rs4409764 |
| 1000 genomes | rs4409764 |
| hgdp | rs4409764 |
| ensembl | rs4409764 |
| geneview | rs4409764 |
| scholar | rs4409764 |
| rs4409764 | |
| pharmgkb | rs4409764 |
| gwascentral | rs4409764 |
| openSNP | rs4409764 |
| 23andMe | rs4409764 |
| SNPshot | rs4409764 |
| SNPdbe | rs4409764 |
| MSV3d | rs4409764 |
| GWAS Ctlg | rs4409764 |
| GMAF | 0.4949 |
| Max Magnitude | 0 |
| ? | (G;G) (G;T) (T;T) | 28 |
|---|---|---|
|
| ||
| GWAS snp | |
|---|---|
| PMID | [PMID 21102463 ]
|
| Trait | |
| Title | Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci |
| Risk Allele | T |
| P-val | 2E-20 |
| Odds Ratio | 1.2200 [1.17-1.27] |
Implicated in a 2015 Korean cohort for Crohn's disease. [PMID: 25489960]
| GWAS snp | |
|---|---|
| PMID | [PMID 23128233]
|
| Trait | Inflammatory bowel disease |
| Title | Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. |
| Risk Allele | T |
| P-val | 1E-54 |
| Odds Ratio | 1.18 [1.149-1.217] |
[PMID 31844038] Polymorphisms of the TNF Gene and Three Susceptibility Loci Are Associated with Crohn's Disease and Perianal Fistula Crohn's Disease: A Study among the Han Population from South China.
