rs1573496
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (C;C) | 0 | normal |
| (C;G) | 0.68x decreased risk of oral/throat cancers | |
| (G;G) | 0.68x decreased risk of oral/throat cancers |
| Reference | GRCh38 38.1/141 |
| Chromosome | 4 |
| Position | 99428512 |
| Gene | ADH7 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs1573496 |
| dbSNP (classic) | rs1573496 |
| ClinGen | rs1573496 |
| ebi | rs1573496 |
| HLI | rs1573496 |
| Exac | rs1573496 |
| Gnomad | rs1573496 |
| Varsome | rs1573496 |
| LitVar | rs1573496 |
| Map | rs1573496 |
| PheGenI | rs1573496 |
| Biobank | rs1573496 |
| 1000 genomes | rs1573496 |
| hgdp | rs1573496 |
| ensembl | rs1573496 |
| geneview | rs1573496 |
| scholar | rs1573496 |
| rs1573496 | |
| pharmgkb | rs1573496 |
| gwascentral | rs1573496 |
| openSNP | rs1573496 |
| 23andMe | rs1573496 |
| SNPshot | rs1573496 |
| SNPdbe | rs1573496 |
| MSV3d | rs1573496 |
| GWAS Ctlg | rs1573496 |
| GMAF | 0.05785 |
| Max Magnitude | 0 |
| ? | (C;C) (C;G) (G;G) | 28 |
|---|---|---|
|
| ||
rs1573496 is a SNP in the ADH7 alcohol dehydrogenase 7 gene.
A study of over 3,800 cases of "upper aerodigestive" cancers (mouth/throat, voice box, and esophageal cancers) concluded that the rs1573496(G) allele has a protective effect. Carriers of this allele had a 0.68x (decreased; p=10-9) risk of having one of these cancer types.[PMID 18500343]
[PMID 19861527] Impact of multiple alcohol dehydrogenase gene polymorphisms on risk of upper aerodigestive tract cancers in a Japanese population
[PMID 20336794
] A single nucleotide polymorphism in the alcohol dehydrogenase 7 gene (alanine to glycine substitution at amino acid 92) is associated with the risk of squamous cell carcinoma of the head and neck
[PMID 21437268] A Genome-Wide Association Study of Upper Aerodigestive Tract Cancers Conducted within the INHANCE Consortium. The data in this paper, makes it seem that (G;G) was much more common. This is inconsistent with the HapMap frequencies, suggesting the sequence may have been flipped.
[PMID 16685648] Diplotype trend regression analysis of the ADH gene cluster and the ALDH2 gene: multiple significant associations with alcohol dependence.
[PMID 17185388] Multiple ADH genes modulate risk for drug dependence in both African- and European-Americans.
[PMID 17273965] Evidence of positive selection on a class I ADH locus.
[PMID 18331377] Association of ADH and ALDH genes with alcohol dependence in the Irish Affected Sib Pair Study of alcohol dependence (IASPSAD) sample.
[PMID 19193628] ADH single nucleotide polymorphism associations with alcohol metabolism in vivo.
[PMID 19298322] Associations and interactions between SNPs in the alcohol metabolizing genes and alcoholism phenotypes in European Americans.
[PMID 19687126] A non-synonymous variant in ADH1B is strongly associated with prenatal alcohol use in a European sample of pregnant women.
[PMID 20700531] The association of alcohol and alcohol metabolizing gene variants with diabetes and coronary heart disease risk factors in a white population.
[PMID 23149980] Alcohol dehydrogenase and aldehyde dehydrogenase gene polymorphisms, alcohol intake and the risk of colorectal cancer in the European Prospective Investigation into Cancer and Nutrition study
