Comparison Utility[edit]
First Unzipped Text File with Raw Data: Second Unzipped Text File with Raw Data: Report Single Strand Matches of length at least bases Report Double Strand Matches of length at least bases Treat No-Calls as Matching SNPs? Treat as matches any non-matching SNP that is at least SNPs away from its nearest non-matching SNP
Files to be processed: File1: 125649-autosomal-o-results (1).csv File2: genome_John_Lloyd_Scharf_Full_20111106211533.txt
Differently Reported SNPs:
File1 File2 1 rs1240719 1336768 AA TT 1 rs1153103 1404875 TT AA 1 rs11580880 6197588 AA TT 1 rs6586501 17074942 TT AA 1 rs2904846 25579848 GG CC 1 rs12096803 28764902 TT AA 1 rs2230677 29347981 CC GG 1 rs12023541 33864178 CT TT 1 rs7543052 46568034 CC GG 1 rs12724260 47655348 GG CC 1 rs10888679 50338853 CT TT 1 rs12060107 53125164 CC GG 1 rs440336 55693078 AG GG 1 rs17265796 61663772 AA AC 1 rs12135608 70393878 AA TT 1 rs4620554 105108039 CC CT 1 rs10857898 111922476 AG GG 1 rs2404361 144800625 GG CC 1 rs1864346 157003069 TT CT 1 rs10911506 182320392 AG AA 1 rs2640175 196687890 GT GG 1 rs4258224 207349163 AC CC 1 rs2819493 225756452 CT CC 1 rs12023743 233400875 TT AA 2 rs2372694 36715177 AG AA 2 rs6730977 51035335 GG AG 2 rs2542528 71469042 CT CC 2 rs17261683 80588482 AC CC 2 rs34261189 109803275 AG AA 2 rs7589766 112345793 AA TT 2 rs2121374 113858688 AG AA 2 rs1201484 113944061 CC GG 2 rs2602653 125356759 CC CT 2 rs6431176 127249549 TT CT 2 rs13392568 131707636 TT AA 2 rs2677468 156249416 CC AC 2 rs6748197 156636742 CC CT 2 rs6720264 158499806 GG AG 2 rs4664268 159736628 CC GG 2 rs10930139 165461660 TT CT 2 rs1004368 168350216 AG AA 2 rs12999589 176840973 TT AA 2 rs17297290 196564286 AG AA 2 rs6740981 200768461 CC CT 2 rs28626139 218954572 GG CC 2 rs2396261 226253774 TT CT 2 rs13020195 241157063 CC GG 2 rs2975781 241215102 CT TT 3 rs1667850 6978531 GG AG 3 rs461127 10214909 GG CC 3 rs12495958 15916443 GT GG 3 rs11919400 42980983 AG GG 3 rs13061999 48884450 CC GG 3 rs17202181 81595553 CC CT 3 rs11708806 96793533 CT CC 3 rs2091667 105388608 AG GG 3 rs7628453 106390621 CC CT 3 rs6777508 118077801 AG AA 3 rs6762289 123242334 AC CC 3 rs7618658 126654059 CT CC 3 rs13067844 130391184 AA TT 3 rs7636189 136683773 CT TT 3 rs901862 157252074 AC CC 3 rs28722064 173239626 TT AA 3 rs34133935 182098277 CT TT 3 rs7632075 194585722 CC CT 4 rs224480 11072871 CT TT 4 rs7674882 28565248 CT TT 4 rs4695446 48796913 TT AA 4 rs6830316 48804749 GG CC 4 rs4078505 56343566 CT CC 4 rs13125208 74721096 GT TT 4 rs17838982 74921127 GG CC 4 rs2231137 89280138 CT CC 4 rs7676797 95318217 AG AA 4 rs4147541 100493180 CC GG 4 rs10518400 123801876 GG AG 4 rs13123291 130696135 AC CC 4 rs2705575 146446237 AG GG 4 rs1429123 148573390 CT CC 4 rs13137679 149838825 GG AG 4 rs1899550 152626686 CT TT 4 rs10002306 165645176 GT TT 4 rs4481275 191066832 AG AA 5 rs160897 3185160 AG AA 5 rs13158336 17642680 AA TT 5 rs6891237 18600088 AG AA 5 rs6891206 26005136 CT TT 5 rs12658519 30868592 GG AG 5 rs10473013 36360339 GT GG 5 rs662311 55530243 GG CC 5 rs28591114 69211579 GG CC 5 rs10054531 74836903 TT AA 5 rs26720 92161434 CC AC 5 rs2303138 96376466 GG AG 5 rs329187 125110194 AG GG 5 rs13178353 126503471 CT TT 5 rs1531267 162372600 AA GG 5 rs13360297 177172100 GG CC 5 rs732531 178269821 AC AA 6 rs1576662 1102946 AG AA 6 rs9406173 8461061 AG GG 6 rs6938515 13997417 AG AA 6 rs7756075 16249595 GG AG 6 rs9393243 22274531 AG AA 6 rs1924690 23779859 CT TT 6 rs12661273 27147455 AA AG 6 rs1737083 29825790 AA AG 6 rs2394173 29881137 CC CT 6 rs3734836 30088052 TT CT 6 rs28549156 30407054 TT AA 6 rs185923 33077511 GG CC 6 rs9501289 33339038 TT AA 6 rs28385696 44341502 AA TT 6 rs12181911 81092824 AA AG 6 rs4495251 91902424 AC CC 6 rs6925077 110819095 TT CT 6 rs9488650 115815541 GG CC 6 rs1603965 119945222 AC AA 6 rs9388291 124312651 TT CT 6 rs6913708 136180706 CT TT 6 rs7764867 148079484 CT TT 6 rs10872653 150141736 AC CC 6 rs1474787 151295075 CC CT 6 rs35656780 153373728 AA TT 6 rs1761589 156992062 GG AG 7 rs1859838 30921642 GG AG 7 rs12538656 40948301 GG AG 7 rs9642306 49599837 AA AG 7 rs1442252 52649521 GT TT 7 rs845551 55204777 AG GG 7 rs2077180 65902880 AG AA 7 rs12671074 72725314 GG CC 7 rs10239316 74844680 GG CC 7 rs7811372 75253737 AG GG 7 rs10227345 75609328 GT GG 7 rs2157745 92543595 GT TT 7 rs2040993 94885236 AA TT 7 rs10267426 99832236 GG CC 7 rs10275927 109137247 GG AG 7 rs9640161 149676843 AC CC 8 rs2979656 6319166 AG AA 8 rs17125056 17573215 GG AG 8 rs10111746 56565612 AG GG 8 rs13250696 62671708 CT CC 8 rs7825569 70057575 CC CT 8 rs11775310 76642429 GG AG 8 rs10087899 88480167 GT GG 9 rs1576939 7754226 AG GG 9 rs1854690 10937974 CT CC 9 rs3920568 14026242 AG GG 9 rs2383053 17906555 GT GG 9 rs10966831 25271072 AA AC 9 rs3750438 35782249 GG CC 9 rs2507413 66028342 CC GG 9 rs1561958 99709620 GT GG 9 rs1464250 108993293 TT CT 9 rs10119000 113530186 CC CT 9 rs10125079 113742850 AG GG 9 rs1771221 115202939 TT AA 9 rs7040032 117502133 AG AA 9 rs9314645 140125574 AG AA
10 rs2904804 4999759 AC GT 10 rs873930 7569980 GG AG 10 rs11253779 16178495 CC CT 10 rs10826460 19128078 AG GG 10 rs548193 29477980 AG GG 10 rs1909423 54825708 AC AA 10 rs10763263 57241141 CT TT 10 rs7393360 96584302 AA TT 10 rs10509855 109569973 AA AG 10 rs979416 117582721 CC CT 10 rs7084430 122430603 CT CC 10 rs11248451 124963883 TT GT 11 rs11826813 22957486 GG AG 11 rs1822339 24315938 AG GG 11 rs7119079 24322484 AG AA 11 rs554576 34440470 TT AA 11 rs2861934 40596936 AA AC 11 rs10838139 43600200 AC CC 11 rs11537202 60620279 AG AA 11 rs4462301 98507753 CT TT 11 rs2656172 98826953 CC CT 11 rs11226931 105501620 CC CT 12 rs28990684 2856527 GG CC 12 rs4149649 6307900 TT AA 12 rs1906197 18779197 AG AA 12 rs4963543 19536941 AG AA 12 rs4269970 20685192 GT GG 12 rs10842232 23877853 CC AC 12 rs11053149 34220859 AC AA 12 rs12304591 54521630 AA TT 12 rs11171817 55048112 TT AA 12 rs1800175 55847646 GT TT 12 rs1168757 64880383 CT TT 12 rs11177322 67320883 AC CC 12 rs2408366 89716266 AG AA 12 rs11109113 96487131 GG AG 12 rs4762437 96729841 AG GG 12 rs7304073 100073385 GG CC 12 rs35532624 100310114 TT AA 12 rs6539346 106461276 AC CC 12 rs4310669 108603378 CT TT 12 rs12821913 128168924 AC CC 12 rs11147281 132268027 CT TT 13 rs9553473 24403593 GT TT 13 rs7984684 43517893 GT GG 13 rs9318337 74832381 AG GG 13 rs9545199 79279719 GT TT 13 rs9555175 104943461 CC GG 13 rs9521170 108539079 AG AA 14 rs28699618 18397823 GG CC 14 rs1188542 19719006 CT TT 14 rs1958301 23359650 CT TT 14 rs17113838 34774418 CT TT 14 rs2180830 60246238 CT CC 14 rs741198 91437164 TT CC 14 rs12100517 94355770 AG AA 14 rs4983395 104047880 AG AA 15 rs2934067 26723446 CC GG 15 rs1664436 55498210 GG GT 15 rs28693826 72789002 AA TT 15 rs11856579 75799743 GG AG 15 rs11629637 76806079 CT CC 15 rs16976763 84742908 AC CC 15 rs12900242 85137690 AC AA 15 rs2028299 88175261 AC CC 15 rs4556745 92203208 CT TT 16 rs12709221 8120255 CT TT 16 rs12445351 11268084 TT AA 16 rs3889206 17097541 GT GG 16 rs10400971 17436670 AG GG 16 rs9926129 23220280 TT AA 16 rs11540497 28242495 CC GG 16 rs2112991 29295878 GG CC 16 rs17884850 31011903 GG CC 16 rs11645526 31175740 AG GG 16 rs1209760 45267501 TT AA 16 rs2287078 51884361 AG GG 16 rs8051412 54228226 AA TT 16 rs1213198 66284444 TT AA 16 rs12918064 66835291 TT AA 16 rs16971447 71565471 TT CT 16 rs4328467 73434113 AG AA 16 rs11866920 74911254 GT GG 16 rs35270463 80036773 GG CC 16 rs7199004 87195552 AG GG 16 rs3096324 87950324 GG AG 17 rs4790706 4636312 CC CT 17 rs2323755 15445465 TT AA 17 rs9906769 24741698 GG CC 17 rs28588448 30359735 AA TT 17 rs2246292 35760787 GG CC 17 rs7214288 36495486 AC CC 17 rs11657618 55582582 CC GG 17 rs11077765 64289503 AG AA 17 rs12941264 64727307 CT TT 17 rs8182241 66475135 GG AG 17 rs34901497 70668950 GG CC 18 rs8083260 537239 AC AA 18 rs9949746 4190307 AA AG 18 rs6506544 8003716 CC CT 18 rs4239304 11975662 TT CT 18 rs11875326 36051764 CT TT 18 rs17061875 61973673 GG AG 18 rs661859 72231935 CC CT 19 rs7507174 8153444 AG AA 19 rs11881590 9671038 AG GG 19 rs12972150 13922882 TT AA 19 rs12082 15131636 CC CT 19 rs12610078 23141809 CT CC 19 rs8107298 23816195 GT TT 19 rs28836244 47245038 TT AA 19 rs12974700 47460128 TT AA 19 rs2239381 51569245 AG AA 19 rs1693994 51941547 GG CC 19 rs34814003 55083574 GG CC 19 rs3956158 55817297 CC GG 19 rs7254323 62518709 CT CC 20 rs6115606 26219193 GG CC 20 rs2378252 32747064 CT CC 20 rs6032488 43795788 AG AA 20 rs13040250 48940107 TT AA 21 rs28971224 9849404 TT AA 21 rs2242834 15772179 AA AG 21 rs207005 17657492 CT CC 21 rs6518071 21379198 AG AA 21 rs2827466 22694927 CT TT 21 rs17860248 33524131 GG CC 21 rs2839208 46545464 AA TT 22 rs9620289 22229964 CT TT 22 rs113413 22622264 AG CT 22 rs7284474 29720187 CT TT 22 rs5767686 44989852 TT CC
682204 SNPs appear in both files
0.975 % (6653) of these 682204 common SNPs are NoCalls (i.e. NoCall in at least one file)
0.043 % (294) of the 682204 SNP results differ
88 differing SNPs are both homozygous 65 differing SNPs are homozygous in File1 but not in File2 139 differing SNPs are homozygous in File2 but not in File1
Processing Completed.
