Rs669

From SNPedia
Jump to: navigation, search

is asnp
is mentioned by
dbSNPrs669
nextbiors669
hapmaprs669
1000 genomesrs669
hgdprs669
ensemblrs669
gopubmedrs669
scholarrs669
googlers669
pharmgkbrs669
gwascentralrs669
openSNPrs669
23andMers669
23andMe allrs669
SNP Nexus

SNPshotrs669
SNPdbers669
MSV3drs669
GeneA2M
Chromosome12
Orientationminus
Position9232268
ReferenceGRCh37 37.1/131
Max Magnitude2
Geno Mag Summary
(A;A) 0 normal
(A;G) possibly increased risk for Alzheimers
(G;G) 2 3.8x or higher increased risk for Alzheimers
? (A;A) (A;G) (G;G) 28
rs669 is a SNP in the alpha-2-macroglobulin A2M gene. In dbSNP orientation, the rs669(A) allele encodes an isoleucine, and the rs669(G) allele encodes a valine; the SNP is also known as the Ile/Val variant.

On its own, rs669 was not seen to reproducibly and independently increase risk for Alzheimer's disease in several studies of ~200 Italian patients. However, the T-C-A haplotype of rs12316150-rs1050283-rs669 was associated with both early- and late-onset Alzheimer's disease. The majority of the disease risk from this haplotype was based on rs1050283.[PMID 18191876]

The original 2004 study of 148 Italian sporadic AD patients yielded an odds ratio for the rs669(G;G) genotype (as oriented in dbSNP orientation) of 3.81 (CI: 1.66-8.75). The presence of rs2333227(C;C), in addition to rs669(G;G), appears to synergistically increase the risk of AD to an odds ratio of 25.5 (CI: 4.65-139.75), regardless of ApoE status.[PMID 15023809]

OMIM103950
DescALPHA-2-MACROGLOBULIN POLYMORPHISM
Variant0001
Relatedalso


[PMID 21122033] Leukoaraiosis is associated with genes regulating blood-brain barrier homeostasis in ischaemic stroke patients

Personal tools
Namespaces
Variants
Actions
Navigation
Toolbox