Rs2200733

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dbSNPrs2200733
hapmaprs2200733
hgdprs2200733
ensemblrs2200733
gopubmedrs2200733
scholarrs2200733
googlers2200733
pharmgkbrs2200733
hgvbaseg2prs2200733
medrefsnprs2200733
23andMers2200733
SNP Nexus

GeneLOC729065
Chromosome4
Orientationplus
Position111929617
GenotypeEffect
rs2200733(C;C)normal
rs2200733(C;T)1.4x increased risk of atrial fibrillation and ischemic stroke
rs2200733(T;T)1.4x increased risk of atrial fibrillation and ischemic stroke


Genotypes Magnitude Summary
Rs2200733(C;C) 00 normal
Rs2200733(C;T) 22 1.4x increased risk of atrial fibrillation and ischemic stroke
Rs2200733(T;T) 2.22.2 1.4x increased risk of atrial fibrillation and ischemic stroke
Two SNPs from chromosome 4q25, rs2200733 and rs10033464, were found to be associated with atrial fibrillation in a study of both European and Asian populations. The odds ratio associated with one or more copies of either risk allele was ~1.4x.[PMID 17603472]

[PMID 18931155] The results derived from a study of 78 Italians with atrial fibrillation (AF) and atrial flutter (AFL) agree with previously reported findings from the Icelandic study ([PMID 17603472]), which also found that the rs2200733(T) was associated with AF/AFL disease.

[PMID 18991354] In 1,661 Icelandic ischemic stroke samples and two large European replication sets combined, rs2200733 was associated with cardioembolic stroke (CES) (odds ratio 1.54, p = 8.05 x 10e-9). rs2200733 even showed association to ischemic stroke that was not classified as cardioembolic stroke.

[PMID 19141561] rs2200733 and rs10033464 are strongly associated with AF in four cohorts of European descent.

genesherpa does a blog post about this snp

? (C;C) (C;T) (T;T)
GWAS
SNP rs2200733
PubMedID [PMID 17603472]
Condition Atrial fibrillation/atrial flutter
Gene PITX2,ENPEP
Risk Allele T
pValue 3.00E-041
OR 1.72
95% CI 1.59-1.86


Related to ATRIAL FIBRILLATION, FAMILIAL, 5; ATFB5 according to omim 611494. See also
GWAS snp
PMID [PMID 19597491]
Trait Atrial fibrillation
Title A sequence variant in ZFHX3 on 16q22 associates with atrial fibrillation and ischemic stroke
Risk Allele
P-val 1E-14
Odds Ratio 1.42 [NR]

[PMID 19707791] Assessment of association of rs2200733 on chromosome 4q25 with atrial fibrillation and ischemic stroke in a Chinese Han population

PharmGKBPA162356665
Name
AnnotationGWAS Results: Variants conferring risk of atrial fibrillation on chromosome 4q25 (Initial Sample Size: 550 cases, 4,476 controls; Replication Sample Size: 3,363 cases, 17,616 controls; Risk Allele: rs2200733-T). This variant is associated with atrial fibrillation and atrial flutter.
Gene-
Featue
EvidencePubMed ID:17603472; Web Resource:http://www.genome.gov/gwastudies/
Drugs
DiseasesAtrial Fibrillation, Atrial Flutter
Curation LevelNon-Curated