Rs1800056

From SNPedia
Jump to: navigation, search

is asnp
is mentioned by
dbSNPrs1800056
nextbiors1800056
hapmaprs1800056
1000 genomesrs1800056
hgdprs1800056
ensemblrs1800056
gopubmedrs1800056
scholarrs1800056
googlers1800056
pharmgkbrs1800056
gwascentralrs1800056
openSNPrs1800056
23andMers1800056
23andMe allrs1800056
SNP Nexus

SNPshotrs1800056
SNPdbers1800056
MSV3drs1800056
GeneATM
Chromosome11
Orientationplus
Position108138003
ReferenceGRCh37 37.1/131
Max Magnitude1.5
Geno Mag Summary
(C;C) 1.5 1.5x increased risk for breast cancer
(C;T) 1.05 very slightly increased risk (1.05) for breast cancer
(T;T) 0 normal
? (C;C) (C;T) (T;T) 28

This SNP, also known as F858L, a variant in the ATM gene, is 1 of 25 SNPs reported to represent independently minor, but cumulatively significant, increased risk for breast cancer. [PMID 17341484]

For details of all 25 SNPs in this group, along with the two methods used to calculate overall risk estimates for breast cancer, refer to the SNPedia breast cancer entry.

For this particular SNP, the risk (minor) allele is (C).

Another large meta-analysis published in 2011, comprising 26,000+ breast cancer cases and almost 30,000 controls from 23 studies in the Breast Cancer Association Consortium, found average odds ratios of 1.05 for heterozygotes and 1.51 for homozygotes of each of 5 ATM gene SNPs, of which this is one.[PMID 20826828]

Personal tools
Namespaces
Variants
Actions
Navigation
Toolbox