Rs1799852
From SNPedia
| is a | snp |
| is | mentioned by |
| dbSNP | rs1799852 |
| hapmap | rs1799852 |
| hgdp | rs1799852 |
| ensembl | rs1799852 |
| gopubmed | rs1799852 |
| scholar | rs1799852 |
| rs1799852 | |
| pharmgkb | rs1799852 |
| hgvbaseg2p | rs1799852 |
| medrefsnp | rs1799852 |
| 23andMe | rs1799852 |
| SNP Nexus |
| Chromosome | 3 |
| Orientation | plus |
| Position | 134958411 |
| Genotype | Effect |
|---|---|
| rs1799852(C;C) | |
| rs1799852(C;T)* | ? |
| rs1799852(T;T) |
| Genotypes | Magnitude | Summary |
|---|---|---|
| Rs1799852(C;C) | 00 | |
| Rs1799852(T;T) | 22 |
| GWAS snp | |
|---|---|
| PMID | [PMID 19084217] |
| Trait | Serum markers of iron status |
| Title | Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels |
| Risk Allele | |
| P-val | 0.000005 |
| Odds Ratio | 0.43 [0.25-0.61] SD decrease |
| ? | (C;C) (C;T) (T;T) |
|---|---|
|
| |
Related to TRANSFERRIN; TF
according to omim 190000. See also
| PharmGKB | PA164740113 |
| Name | |
| Annotation | GWAS results: Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels. (Initial Sample Size: 459 twin pairs; Replication Sample Size: NR); (Region: 3q22.1; Reported Gene(s): TF; Risk Allele: rs1799852-?); (p-value= 0.000005).This variant is associated with Serum markers of iron status. |
| Gene | TF |
| Featue | Exon/Syn |
| Evidence | PubMed ID:19084217; Web Resource:http://www.genome.gov/gwastudies/ |
| Drugs | |
| Diseases | |
| Curation Level | Non-Curated |
