Rs1799724

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is asnp
is mentioned by
dbSNPrs1799724
hapmaprs1799724
hgdprs1799724
ensemblrs1799724
gopubmedrs1799724
scholarrs1799724
googlers1799724
pharmgkbrs1799724
hgvbaseg2prs1799724
medrefsnprs1799724
23andMers1799724
SNP Nexus

GeneLOC100289233
Chromosome6
Orientationplus
Position31542482
ReferenceGRCh37 37.1/131
GenotypeEffect
rs1799724(C;C)normal risk
rs1799724(C;T)if ApoE4(-), 1.6x risk of AD; if (+), 6.6x risk
rs1799724(T;T)if ApoE4(-), 1.6x risk of AD; if (+), 6.6x risk


Genotypes Magnitude Summary
Rs1799724(C;C) 00 normal risk
Rs1799724(C;T) if ApoE4(-), 1.6x risk of AD; if (+), 6.6x risk
Rs1799724(T;T) if ApoE4(-), 1.6x risk of AD; if (+), 6.6x risk
rs1799724, a SNP in the tumor necrosis factor TNF gene, was found in a study of ~500 Caucasians to be both an independent risk factor for the development of Alzheimer's disease and also a modifier of the risk for individuals carrying ApoE4 alleles. [PMID 15895461]

On its own, the rs1799724(T) allele led to an odds ratio of 1.63 (CI: 1.13-2.34, p=0.009). In carriers of ApoE4 alleles, the odds ratio changed from 2.92 (CI: 2.00-4.27) in the absence of rs1799724(T) to an OR of 6.65 (CI: 3.26-13.55, p=0.03) in its presence. [PMID 15895461]

In a Chinese study [PMID 18551993], post-menopausal women were significantly more likely to have low bone mineral density if they had

Neighborrs1041981
Distance1698
Neighborrs361525
Distance619
Neighborrs1800629
Distance549
Neighborrs1800750
Distance481
Neighborrs1799964
Distance174
Neighborrs1800630
Distance6


[PMID 19282863] Association of candidate gene polymorphisms with chronic kidney disease in Japanese individuals with hypertension

Related to TUMOR NECROSIS FACTOR; TNF according to omim 191160. See also


news cigarette smoking and gastric cancer risk

PharmGKBPA161145121
NameTNF:?857 C/T
AnnotationHaplotype tagging SNP.
GeneLTA, TNF
Featue
EvidencePubMed ID:17450233
Drugs
Diseases
Curation LevelCurated

[PMID 20357201] Association of Polymorphisms of Tumor Necrosis Factor and Tumor Protein p53 with Primary Open Angle Glaucoma: A Replication Study of Ten Genes in A Chinese Population

? (C;C) (C;T) (T;T)