Rs17696736

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is asnp
is mentioned by
dbSNPrs17696736
hapmaprs17696736
hgdprs17696736
ensemblrs17696736
gopubmedrs17696736
scholarrs17696736
googlers17696736
pharmgkbrs17696736
hgvbaseg2prs17696736
medrefsnprs17696736
23andMers17696736
SNP Nexus

GeneC12orf30
Chromosome12
Orientationplus
Position110971201
GenotypeEffect
rs17696736(G;G)1.9x risk
rs17696736(A;G)1.3x risk
rs17696736(A;A)normal


Genotypes Magnitude Summary
Rs17696736(A;A) 00 normal
Rs17696736(A;G) 1.3x risk
Rs17696736(G;G) 1.9x risk
Rs17696736(T;T) 00

rs17696736 has been reported in a large study to be associated with type-1 diabetes.

The risk allele (oriented to the dbSNP entry) is (G); the odds ratio associated with heterozygotes is 1.34 (CI 1.16-1.53), and for homozygotes, 1.94 (CI 1.65-2.29). [PMID 17554300]

In an expanded follow-up study of >6,000 controls and 6,000 patients, the heterozygote odds ratio for this SNP was recalculated to be 1.22 (CI 1.15–1.28). [PMID 17554260]

? (A;A) (A;G) (G;G)
GWAS
SNP rs17696736
PubMedID [PMID 17554260]
Condition Type 1 diabetes
Gene C12orf30
Risk Allele G
pValue 2.00E-016
OR 1.22
95% CI 1.15-1.28


GWAS snp
PMID [PMID 18978792]
Trait Type 1 diabetes
Title Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci
Risk Allele G
P-val 6E-18
Odds Ratio NR NR


[PMID 19565500] Variants in TNFAIP3, STAT4, and C12orf30 loci associated with multiple autoimmune diseases are also associated with juvenile idiopathic arthritis

Related to DIABETES MELLITUS, INSULIN-DEPENDENT, 20; IDDM20 according to omim 612520. See also


Related to DIABETES MELLITUS, INSULIN-DEPENDENT; IDDM according to omim 222100. See also


PharmGKBPA162356646
Name
AnnotationGWAS Results: Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls (Initial Sample Size: 1,963 cases, 2,938 controls; Replication Sample Size: (see Todd 2007); Risk Allele: rs17696736-G). This variant is associated with type 1 disease.
GeneC12orf30
Featue
EvidencePubMed ID:17554300; Web Resource:http://www.genome.gov/gwastudies/
Drugs
DiseasesDiabetes Mellitus, Diabetes Mellitus, Type 1
Curation LevelNon-Curated