Rs1042725

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is asnp
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dbSNPrs1042725
nextbiors1042725
hapmaprs1042725
1000 genomesrs1042725
hgdprs1042725
ensemblrs1042725
gopubmedrs1042725
scholarrs1042725
googlers1042725
pharmgkbrs1042725
gwascentralrs1042725
openSNPrs1042725
23andMers1042725
23andMe allrs1042725
SNP Nexus

SNPshotrs1042725
SNPdbers1042725
MSV3drs1042725
GeneHMGA2
Chromosome12
Orientationplus
Position66358347
ReferenceGRCh37 37.1/131
Max Magnitude2
Geno Mag Summary
(C;C) 2 ~0.8cm taller
(C;T) 2 ~0.4cm taller
(T;T) Average height
? (C;C) (C;T) (T;T) 28
nature SNP rs1042725 is associated with height (P = 4E-8) in a study involving over 20,000 individuals. The gene harboring this SNP, HMGA2, is a strong biological candidate for having an influence on height, since rare, severe mutations in this gene are known to alter body size in mice and humans.

rs1042725 is estimated to explain approx 0.3% of population variation in height in both adults and children (approx 0.4 cm increased adult height per C allele).

[PMID 19139030] rs1042725 is associated with increased height (0.36 cm 95% IC[0.12-0.61] per C allele, P=0.004). in men rs1042725 may explain 3% of height variability

GWAS
SNP rs1042725
PubMedID [PMID 17767157]
Condition Height
Gene HMGA2
Risk Allele C
pValue 6.00E-016
OR 0.4
95% CI NR) cm per copy in adult heigh


GWAS snp
PMID [PMID 18391950]
Trait Height
Title Identification of ten loci associated with height highlights new biological pathways in human growth
Risk Allele T
P-val 3.0000000000000003E-20
Odds Ratio 0.48 [0.58-1.09] cm shorter
GWAS snp
PMID [PMID 18391952]
Trait Height
Title Genome-wide association analysis identifies 20 loci that influence adult height
Risk Allele C
P-val 2.9999999999999998E-18
Odds Ratio 0.05 [0.03-0.08] SD taller - among males
OMIM611547
DescSTATURE QUANTITATIVE TRAIT LOCUS 9; STQTL9
Variant
Relatedalso

[PMID 19842074] Insights into the Regulation of a Common Variant of HMGA2 Associated with Human Height During Embryonic Development

PharmGKBPA162356689
Name
AnnotationGWAS Results: A common variant of HMGA2 is associated with adult and childhood height in the general population (Initial Sample Size: 4,921 individuals; Replication Sample Size: 29,098 individuals (19,064 adults)).
GeneHMGA2
Featue
EvidencePubMed ID:17767157; Web Resource:http://www.genome.gov/gwastudies/
Drugs
Diseases
Curation LevelNon-Curated

[PMID 20058197] Insights into the regulation of a common variant of HMGA2 associated with human height during embryonic development

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